Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00284 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATGAAGAAAGAGAGAGACTGCTGTAGCTATTCGGGCTCGCTGGGTACTGACAAGAGGGAAAAGAAACAATCGGAGAAGAATGAAGAGAGTCACATTACACCATCTACCATTGATCATACTAAGCGCAGCAGATTCTATGTTGCCAAAAAAGAGGGTGTGAAGAACAAACAGGTCACTGGTGTGACAGTTGAGAGATCAAGAAGGAGTGGCAGAAACACCTTGATGATTGGAAGCAAGGAGGGCTGGGCTGCTGTGTCAATTCAATCCATTTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGGTATCTAGTTCGGAAAAGGGTGGCTGCAACTCTTCACAGTGTGCAAGCAATGATAAGAGCTCAAGCTGTTGCTCGATCGGTTCGAGCTCGTCGATCCATGGACAAGGAGAACAGATTTCACCCAGAATCTCCTTCCAGAAAATATGCGCAACAGTTTGATGCAACAAGAAATTATCAATCTCGCAACAGAAGGGCACGCATATACTGTAAGGCACCATCGGATGGATTTGACGAGAGCTCAAAAGTTTTTGAGTTTGACACTCGCATGGCCCATTCAAGATCTCGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCCTCCTCTCTTCCATGTCCAGTTCAAGGTCGAATCTCCCTTCATGAAAGGCGTCAGCAGCCTCAAGAGTTTGAATGGTTCTTCAATCTTGACGAAGGTAACAAGTTCTCCTCAGCACACAACACCCCTCGTCTATCAAAATGTACGATACCAGCTACTCCATTGAAGAGTGTTTGTGGTGACACCTTCAGGAGCTGCTCCGATTTCCCTAACTACATGGCCAACACCCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCCGAACACAGAAAAAGGCTTTCGATCAATGAAATCATGGCAGCCAGAAACAGTGTCAGTGGTGTTGGAAAGCAGTGGTTATCCAACCCAAAAACTCAAGATTGCTATTTCTTTGACAAGGTTATTTAA 1128 0.4521 MGKATRWLKGLLGMKKERDCCSYSGSLGTDKREKKQSEKNEESHITPSTIDHTKRSRFYVAKKEGVKNKQVTGVTVERSRRSGRNTLMIGSKEGWAAVSIQSIFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRAQAVARSVRARRSMDKENRFHPESPSRKYAQQFDATRNYQSRNRRARIYCKAPSDGFDESSKVFEFDTRMAHSRSRSINTAMSECGEELHYQAMSSSLPCPVQGRISLHERRQQPQEFEWFFNLDEGNKFSSAHNTPRLSKCTIPATPLKSVCGDTFRSCSDFPNYMANTHSSKAKLRSHSAPKQRPEHRKRLSINEIMAARNSVSGVGKQWLSNPKTQDCYFFDKVI 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00284 375 Pfam Protein of unknown function (DUF4005) 276 353 IPR025064 -
Vimu4g00284 375 PANTHER IQ-DOMAIN 5-RELATED 1 342 - -
Vimu4g00284 375 MobiDBLite consensus disorder prediction 28 50 - -
Vimu4g00284 375 MobiDBLite consensus disorder prediction 318 337 - -
Vimu4g00284 375 ProSiteProfiles IQ motif profile. 96 121 IPR000048 GO:0005515
Vimu4g00284 375 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Vimu4g00284 375 MobiDBLite consensus disorder prediction 23 50 - -
Vimu4g00284 375 Gene3D - 54 118 - -
Vimu4g00284 375 Gene3D - 119 168 - -
Vimu4g00284 375 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Vimu4g00284 375 Pfam IQ calmodulin-binding motif 120 134 IPR000048 GO:0005515
Vimu4g00284 375 SMART iq_5 115 136 IPR000048 GO:0005515
Vimu4g00284 375 SMART iq_5 92 114 IPR000048 GO:0005515
Vimu4g00284 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 136 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00284 Vimu-Chr4 1969920 1971383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00284 1 355 IQD Protein Family AT3G16490 41.730 2.55e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00284 - - pvu:PHAVU_005G165500g 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00284 4 1969920 1971383 Vimu4g00284 4 1969920 1971383 ECH
Vimu4g00284 4 1969920 1971383 Vimu11g02895 11 48800074 48802925 PCT