Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00280 ATGTCCACCTCTCTTCAATGCAACTCAGAAGCAGCAAATAACACTTTTGTGTCGGCTGCAGCTAGTCAACGGCTAGTTCGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCTTGGCCTTCAAGCCTAAACCGAGCCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACTTACGAAGACAATGGCTGGGATTATTTATTCATCAGGAAAAACTGTTCTTGTGATGCTGGTATGAAGAAATTTGTGTCTAACACCACACTCACAGTGAAATCCAATGGAGGGTTTGTGCATGATCTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTACCCAACACCACATATGGGGCAAGAAAAGATCATGGTGTCATATCACTGAACTTGTTCTGTAGCTGCTCCAGCGGACTGTGGAACTATTTGATGAGCTATGTCATAAAAAATGGGGACAGTGTTGAGTCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGCGAATAATGGCATTGACAATCCTGGTAGCTTCTCTCATCAACAATCTTCTTCAGCACTACAATCTTCTACATCTTCTAGTGTTCAATGGTTGGGATTTGGTTTTAGGGAGTGCTTTCCTGGTGAGCTTTATCACTTAAAGAATGACACTCCTCCAGTTCCAGTCCCTTCCCCGTCTGTAGATGGATTTTCAGCCGACCAAATCAACCAGAAGGGTCGTATGCCCCATGAATGGATCGTAGGAGGTTTTGCTGTTGGTCTTGCTCTGATAATATTGAGCGTTGTTGTCTTTTTATTCCTGAGATCGCCTAATTGTTTGGTTGAAGCCAGAAATAATGCAACAAATTCTGCAGGAAAGATCTCTAACAAGTTCTATGTTTTTGGCAATCCAAATTGGTTTTGTGGATGTGGCAAACCTGTGGACCAGAAGCAAACTGATGTTTTTTCATACGAAGAGATTTTTGCCTCAACCGATAGTTTCTCTGATTCAAATCTGCTTGGGCACAGAGCACATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAGAGAATTACAGCCACTAAAACTAGAGAACTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGAATAACCTCCTTGCAGCAATTCAAGAGCTTGAGTCCAATTTCTTATTAATTTTGTCAAGTCATGATGATTTTTTCCTTATTTATGAGTATGCTCAAAAGGGTTCACTCAGCAGCCATTTGCACGATACTCAAAATAAGGGTCATTCATCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGACGCTGCTAGGGCCATTGAATACATACACGAACATACAAAAACTCGCTACGTCCATCAAGGTATCAAGACAAGCAACATATTGCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAAATGAGGGAGAAACCACAGCATCCAAAGGTGTAAATGCATATGGATATCTCGCTCCAGATGATGTCTATGCATTTGGCGTTGTTCTTTTTGAGATTATATCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAATTCTTAGGAACTCACCTGATTCCGATAGCATGTCAAGCACAAGAAACCTCGTTGATCCTACTATGATGGATCTGTATCCCCATGACTGTGTACATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGATGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCCTGCTGTCTTCTGCTGAGTGGGAAGCCACTCTTGCCGGGAACAGCCAGGTATTCAGCGCTCTTGTTCAGGGAAGATAG 1941 0.4292 MSTSLQCNSEAANNTFVSAAASQRLVRSYPTPTNCTDTSRVCTSFLAFKPKPSQTLAVIQSMFDVLPGEITYEDNGWDYLFIRKNCSCDAGMKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTYGARKDHGVISLNLFCSCSSGLWNYLMSYVIKNGDSVESLASRFGVSMDSIETANNGIDNPGSFSHQQSSSALQSSTSSSVQWLGFGFRECFPGELYHLKNDTPPVPVPSPSVDGFSADQINQKGRMPHEWIVGGFAVGLALIILSVVVFLFLRSPNCLVEARNNATNSAGKISNKFYVFGNPNWFCGCGKPVDQKQTDVFSYEEIFASTDSFSDSNLLGHRAHGSVYYGLLRDQEVAIKRITATKTRELMSEIKVLCKVHHANLNNLLAAIQELESNFLLILSSHDDFFLIYEYAQKGSLSSHLHDTQNKGHSSLSWITRVQIALDAARAIEYIHEHTKTRYVHQGIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTASKGVNAYGYLAPDDVYAFGVVLFEIISGKEAIIQTQGPEKRPLASIMLAILRNSPDSDSMSSTRNLVDPTMMDLYPHDCVHKMAMLAKQCVEDDPVLRPDMKQVVISLSQILLSSAEWEATLAGNSQVFSALVQGR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00280 646 Gene3D Transferase(Phosphotransferase) domain 1 425 635 - -
Vimu4g00280 646 SUPERFAMILY Protein kinase-like (PK-like) 324 618 IPR011009 -
Vimu4g00280 646 ProSiteProfiles Protein kinase domain profile. 341 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00280 646 Gene3D LysM domain 154 196 IPR036779 -
Vimu4g00280 646 Pfam LysM domain 157 190 IPR018392 -
Vimu4g00280 646 Coils Coil 386 406 - -
Vimu4g00280 646 CDD LysM 156 188 IPR018392 -
Vimu4g00280 646 Gene3D Phosphorylase Kinase; domain 1 318 423 - -
Vimu4g00280 646 ProSiteProfiles LysM domain profile. 155 200 IPR018392 -
Vimu4g00280 646 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 77 640 IPR044812 GO:0019199|GO:0045087
Vimu4g00280 646 Pfam Protein tyrosine and serine/threonine kinase 345 616 IPR001245 GO:0004672|GO:0006468
Vimu4g00280 646 FunFam PTI1-like tyrosine-protein kinase 3 424 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00280 Vimu-Chr4 1922099 1927041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00280 32 646 Receptor kinase-like Gene Family AT1G51940 53.293 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu4g00280 PK_Tyr_Ser-Thr 7.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00280 - - vra:106762524 1066.6