Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00272 ATGTTATCGTCAACCAGATGCGCTTTCCTGAGCAACTCAGGGTTAGGTGGGTGTGGAAGCATGGGTGATGCGCCGAGGAGGCGTTTAACTCCTATGAGGGTGGTGTGCATGACCCCAAGCAACGGCAGGCCGGGTGATAGAAACAACAGCGTTGTGATGGAGACGCCTTTGAAAGAATTGAAAAAGGATTCTCCGGTGGATGACGTTGACGGCAACTCCATCTCCGCCGGTGGTCCTCAAGATGTGTACGGCGAGGATAGGGCGACGGAGGACCAGTTTGTTACCCCTTGGAGTGTCTCTGTTGCTAGTGGTTATACATTGTTACGAGATCCTCACTTCAACAAAGGGCTTGCCTTCAGTGAAAAAGAGAGGGATGCTCACTACTTGCGTGGTCTTCTTCCCCCATCAGTTATTCCCCAAAAAACTCAGGTAAAGAAAATGATCCAGCACATACGCCAGTATCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAACGGCTATTTTACACACTTCTTATTGATCACGTTGAAGAGTTACTCCCTGTTGTTTACACTCCAACTGTTGGTGAAGCCTGTCAGAAATATGGGAGCATCTTTATGCGTCCTCAGGGTCTTTATATAAGTTTGAAAGAGAAGGGGAAGATCCGTGAAGTACTAAGGAATTGGCCTGAGAAGAACATCCAAGTCATAGTTGTAACTGATGGAGAACGGATCCTGGGGCTTGGTGATCTTGGTTGTCAGGGAATGGGAATACCGGTGGGGAAACTTTCTTTATATACAGCACTTGGAGGAGTTCGCCCATCAGCTTGTTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGTTGCTGAATGATGAATTATACATTGGGCTAAAGCAAAGACGTGCAACTGGGCAGGAATACGCCGAGCTTATGCACGAATTTATGACAGCACTCAAGCAAACTTATGGAGAAAAGGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTCGAGAAATATAGGTCAACCCATCTGGTCTTTAATGATGATATTCAGGGAACAGCATCGGTTGTCCTTGCTGGATTAGTTGCAGCTCTGAAATTGGTTGGTGGTAATTTAGCTGATCACAGATTCTTGTTTCTTGGTGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACAGACAAATGCTCCACTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTTAGCTCCCGCAAAGACTCACTCCAACATTTCAAGAAGCCCTGGGCTCATGAGCATGAACCTGTTAACAATCTTTTAGATGCTGTTAATCAAATTAAGCCAACAGTGCTGATTGGAACATCGGGACAAGGAAGAACTTTTACTAAAGAGGTGATTGAGGCTATGGCCTCTTTCAACAAGAAACCTATTATCCTTTCTCTTTCCAACCCTACGTCACAGTCAGAATGTACTGCTGAAGAAGCTTACAAATGGAGTCAGGGACGTGCCATTTTTGCAAGTGGGAGTCCATTTCCCCCGGTTGAATATGAGGGAAAAGTGTTTGTGCCTGGCCAGGCCAACAATGCATACATATTTCCTGGATTCGGACTCGGTTTGATAATGTCTGGGACCATTCGAGTGCATGATGACCTTCTTCTGGCTGCCTCTGAGGCTTTGGCTTCACAAGTTAGCCAAGAGAACTTTGACATGGGACTCATATACCCACCATTCACCAACATCAGAAAGATTTCAGCTCACATAGCTGCCAATGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTCGGCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCAGAGAGTTGTATGTACACTCCATCCTACAGAACCTACCGGTGA 1932 0.456 MLSSTRCAFLSNSGLGGCGSMGDAPRRRLTPMRVVCMTPSNGRPGDRNNSVVMETPLKELKKDSPVDDVDGNSISAGGPQDVYGEDRATEDQFVTPWSVSVASGYTLLRDPHFNKGLAFSEKERDAHYLRGLLPPSVIPQKTQVKKMIQHIRQYQVPLQKYMAMMDLQERNERLFYTLLIDHVEELLPVVYTPTVGEACQKYGSIFMRPQGLYISLKEKGKIREVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRATGQEYAELMHEFMTALKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNAPLEEVRKNIWLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVNQIKPTVLIGTSGQGRTFTKEVIEAMASFNKKPIILSLSNPTSQSECTAEEAYKWSQGRAIFASGSPFPPVEYEGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVSQENFDMGLIYPPFTNIRKISAHIAANVAAKAYELGLATRLPQPKDLVKFAESCMYTPSYRTYR 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00272 643 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 82 358 IPR046346 -
Vimu4g00272 643 FunFam Malic enzyme 102 356 - -
Vimu4g00272 643 MobiDBLite consensus disorder prediction 62 84 - -
Vimu4g00272 643 Gene3D - 357 643 - -
Vimu4g00272 643 Pfam Malic enzyme, NAD binding domain 359 611 IPR012302 GO:0051287
Vimu4g00272 643 ProSitePatterns Malic enzymes signature. 355 371 IPR015884 GO:0004471
Vimu4g00272 643 FunFam Malic enzyme 357 643 - -
Vimu4g00272 643 Pfam Malic enzyme, N-terminal domain 168 349 IPR012301 GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 270 292 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 386 402 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 489 505 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 174 198 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 355 371 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 234 263 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 PRINTS Malic enzyme signature 330 348 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 CDD NAD_bind_1_malic_enz 359 637 - -
Vimu4g00272 643 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vimu4g00272 643 PANTHER MALIC ENZYME-RELATED 76 641 - -
Vimu4g00272 643 PIRSF ME 70 643 IPR001891 GO:0004470|GO:0004471
Vimu4g00272 643 Gene3D - 102 356 IPR037062 GO:0004471
Vimu4g00272 643 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 359 642 IPR036291 -
Vimu4g00272 643 SMART Malic_M_2 359 612 IPR012302 GO:0051287
Vimu4g00272 643 SMART malic_2 168 349 IPR012301 GO:0004471
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00272 Vimu-Chr4 1875028 1879842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00272 K00029 - gmx:100791514 1180.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02887 11 48736625 48741947 Vimu4g00272 4 1875028 1879842 ECH
Vimu11g04665 11 67081603 67086448 Vimu4g00272 4 1875028 1879842 ECH
Vimu10g02701 10 38437818 38442486 Vimu4g00272 4 1875028 1879842 ECH
Vimu4g00272 4 1875028 1879842 Vimu4g00272 4 1875028 1879842 ECH
Vimu4g00272 4 1875028 1879842 Vimu10g02701 10 38437818 38442486 ECH
Vimu4g00272 4 1875028 1879842 Vimu11g02887 11 48736625 48741947 PCT