Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00266 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGTAAATATGTCCGTTACACGCCTGAGCAGGTTGAGGCCCTTGAGAGACTTTATCATGACTGCCCCAAACCCAGTTCCATACGCCGCCAGCAGCTCATTCGCGAGTGTCCTATTCTCTCCAACATTGAGCCTAAGCAAATCAAAGTCTGGTTTCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGGTTGCAAGCTGTAAATAGGAAGCTCACAGCCATGAACAAGCTTCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAGTTGGTCTACGAAAATGGCTACTTTCGCCAACACACTCAGAATGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGAACTGCTGTTGA 432 0.4745 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNAYVHCRRDFSRVSFEGYWNCC 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00266 143 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Vimu4g00266 143 CDD bZIP 68 107 - -
Vimu4g00266 143 Gene3D - 11 83 - -
Vimu4g00266 143 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 124 IPR044830 GO:0003700
Vimu4g00266 143 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Vimu4g00266 143 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Vimu4g00266 143 Coils Coil 71 112 - -
Vimu4g00266 143 SMART HOX_1 13 79 IPR001356 GO:0003677
Vimu4g00266 143 CDD homeodomain 16 76 IPR001356 GO:0003677
Vimu4g00266 143 Pfam Homeodomain 16 74 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00266 Vimu-Chr4 1816978 1825523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00266 1 122 Homeobox Transcription Factor Family AT1G52150 95.935 6.90e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu4g00266 Homeodomain 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00266 K09338 - csav:115707515 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00266 4 1816978 1825523 Vimu4g00266 4 1816978 1825523 ECH
Vimu4g00266 4 1816978 1825523 Vimu11g02878 11 48667001 48674213 PCT