Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00259 ATGATCGATACGCCGTGTCACAAAACTCCTAGCAGTAGCACCAGCAACTCCTCCACTTCAAAACCCCATAAAGCAGAGACTCCAAAACAGAGCAAGCTCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGCGTTCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGCCACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCAGCTCTGAGCATCAAGGGCCACACGGCCGTTCTCAATTTCCCTAACCTAGTAAATATGCTTCCCAGACCCGTGACGTCTGCCCCACGTGACATCCAAGTGGCCGCGGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGTGAGTGTTCTGATGAGGCGGAGTCGTCGGAGCTAAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTCGCGTTTATTGACTCAGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGTGAGATGATGGTTGGTGAAGATGAGTGTGGATTCTTCCACTTTCAGACTGATCATCAAAAAACATGTTCCGTTTAG 633 0.5229 MIDTPCHKTPSSSTSNSSTSKPHKAETPKQSKLKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAVLNFPNLVNMLPRPVTSAPRDIQVAAAEAAAMVEFDRECSDEAESSELSEIVELPNIEESLESVESRSEFAFIDSVDSWLYPPMAVGSICEMMVGEDECGFFHFQTDHQKTCSV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00259 210 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Vimu4g00259 210 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Vimu4g00259 210 Pfam AP2 domain 43 94 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 MobiDBLite consensus disorder prediction 25 45 - -
Vimu4g00259 210 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 MobiDBLite consensus disorder prediction 1 45 - -
Vimu4g00259 210 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Vimu4g00259 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 157 - -
Vimu4g00259 210 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vimu4g00259 210 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00259 Vimu-Chr4 1766926 1767558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00259 13 179 AP2-EREBP Transcription Factor Family AT5G11590 54.688 2.12e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu4g00259 AP2 7.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00259 K09286 - gmx:100784419 341.273