Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00254 ATGGCTGGCATAGCATTCGGACGCTTCGATGATTCTTTTAGTTTTTCCTCCATCAAGGCCTACATTGCTGAGTTCATCTCAACCCTTCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTGGCTGTTGCCATTTGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCAGTTGGAGCCAACATTTCTGGCGGCCATGTTAACCCTGCTGTGACCTTTGGGTTGGCTCTTGGAGGTCACATCACCATCCTCACCGGTCTCTTCTACTGGATTGCACAGCTCCTTGGCTCCATAGTGGCCTGCTTTCTCCTCAAGTTTGTCACTGGCTATGATGTTCCTATCCATGGTGTTGCTGCGGGAGTTGGAGCCGGAGAAGGAGTTGTTACTGAGATCATCATCACATTTGGATTAGTGTACACTGTGTATGCCACAGCTGCAGACCCGAAGAAGGGTTCACTTGGTACAATTGCACCCATTGCCATAGGTTTCATCGTTGGTGCAAACATCTTAGCTGCAGCACCATTTTCTGGGGGATCCATGAACCCTGCACGTTCCTTTGGCCCTGCAGTTGTCAGCGGTGACTTTCATGACAACTGGATCTACTGGATTGGCCCTCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTACACCTATGCCTTCATTCCCACCCAGCACCATGCACCTCTCGCCACTGATTTTTGA 747 0.4953 MAGIAFGRFDDSFSFSSIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVACFLLKFVTGYDVPIHGVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAAPFSGGSMNPARSFGPAVVSGDFHDNWIYWIGPLVGGGLAGLIYTYAFIPTQHHAPLATDF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00254 248 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Vimu4g00254 248 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PANTHER AQUAPORIN-8 4 241 IPR034294 -
Vimu4g00254 248 NCBIfam MIP family channel protein 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vimu4g00254 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Vimu4g00254 248 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00254 248 FunFam Probable aquaporin TIP1-1 2 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00254 Vimu-Chr4 1751976 1753133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00254 1 248 Major Intrinsic Protein MIP AT3G16240 78.800 2.26e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00254 K09873 - gmx:100817754 446.432