Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00247 ATGTCTAGAGCATTGGAACAGGACTACATAGGGTTGGCAGAGAAACCGTCAATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCTTCTTCTTCGTCGTCTTCTGTGGATGGTAAAACCTCATCACTCAACTTGAAGGAGACAGAGCTGAGGCTTGGTCTCCCCGGTTGCAAGTCACCAGAGAGAAAATCTGGTTCTGGACTCTGTCTTTTTGGCAGAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTCGCAACCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCTAGGGGGGGCATTGTTGGGAAGCCTCTTATTGCTTTAGACACTCAAACTAATACCTCGCATGCTAACACCTCTATCAAAGAGGTTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAGAAGAATGACCAGGTTGCTGCAGCAAATGGTCATGCCAGTGCTTCTGATGCAAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAGTGATGAAGGCGAGGGAAAATCTGGTTTTGGTTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGACCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGGCTAGCTCCAAGAGTCATGGAGAAATCTAGAAGCCAAAACTAA 1014 0.4546 MSRALEQDYIGLAEKPSMDGGSDKLSSSSSSSSSSVDGKTSSLNLKETELRLGLPGCKSPERKSGSGLCLFGRELQNKHNVCSVATPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGAALFSPRGGIVGKPLIALDTQTNTSHANTSIKEVGAVPQSAKPVQEKNDQVAAANGHASASDAKAQVVGWPPIRSFRKNTMASNLAKNSDEGEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRVMEKSRSQN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00247 337 SUPERFAMILY CAD & PB1 domains 217 318 - -
Vimu4g00247 337 Pfam AUX/IAA family 47 328 IPR033389 -
Vimu4g00247 337 ProSiteProfiles PB1 domain profile. 217 319 IPR000270 GO:0005515
Vimu4g00247 337 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 43 324 IPR003311 GO:0005634|GO:0006355
Vimu4g00247 337 MobiDBLite consensus disorder prediction 21 44 - -
Vimu4g00247 337 Gene3D - 212 331 - -
Vimu4g00247 337 MobiDBLite consensus disorder prediction 1 44 - -
Vimu4g00247 337 MobiDBLite consensus disorder prediction 152 176 - -
Vimu4g00247 337 FunFam Auxin-responsive protein 212 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00247 Vimu-Chr4 1723887 1725970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00247 127 327 B3 DNA Binding Superfamily AT5G62000 25.616 1.03e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu4g00247 AUX_IAA 4.9e-91 CL0072