Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00246 ATGATGACAGGGTTTCCTAACTGGTGGAGCATGCATCCACCATCTTTGATCCCTCCCCAATATGTTCTTCCATCTTCTTCAATTTCTTTTAATTTTTTCACCGAAAATCCAGAGCCTCCTCAGTCATGGACCCAACTGCTTTCTAGTGGATTACCAGGAGAAGAAGAGAAGCTTGGTTTCATTGATTTTCAGCCGAAAAAGTTTGGAAACTGGGATGACCAAATTCTTAATACTGCTTCCGGAGTTTCTAATAACTTTGATGAAATAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTGAAGAATTTCAGGCTTCTGGCTCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCAACCGGGTCTTCTTGTGTCACTAGCATCAGTGGCAATAATATACTTGATTTCAGTTATAACAAGTCAGATCACAGAAAAAATCTTCTACGAGATCAAATATCCGAGTGTAATAGCACAGCCACAGTTGGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCAAGTCAAGCACCTCTCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAACTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGAAGATGCATCAAAAAACACGAGGAATCAACAGTCTCTGTTGAAAGAGAATAATGGCCTGAAAAGAAAAGGAGCTACAAACCAGGAAGGTGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGCTTGGTGCCTGTGTCTTGTACCGAAGATGTTGTGAGCCAAAATGACTGGGGCACCCGCATATACGGCAGAGGATTTTAA 915 0.4219 MMTGFPNWWSMHPPSLIPPQYVLPSSSISFNFFTENPEPPQSWTQLLSSGLPGEEEKLGFIDFQPKKFGNWDDQILNTASGVSNNFDEIKQENSQRGTLYEHGREEFQASGSADSSWSHMVPVSSTGSSCVTSISGNNILDFSYNKSDHRKNLLRDQISECNSTATVGVCKKARVQSSSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLEDASKNTRNQQSLLKENNGLKRKGATNQEGEDKAKELKSRGLCLVPVSCTEDVVSQNDWGTRIYGRGF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00246 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vimu4g00246 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Vimu4g00246 304 MobiDBLite consensus disorder prediction 247 269 - -
Vimu4g00246 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 288 - -
Vimu4g00246 304 Gene3D - 182 264 IPR036638 GO:0046983
Vimu4g00246 304 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00246 Vimu-Chr4 1710482 1712641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00246 171 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 60.345 1.39e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00246 - - vun:114183597 479.944