Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00241 ATGGAGGTGGAGGAGTGGGAAGAAGGAAGTGGAGGAGGTGAAAGGCTGGAAGAGATTAGCAGCGAGAATTCCGGTCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACACGAGGATGCTGATGCTGATGCTGACGGTGACAGAAAAAAGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAAACCTTACGAGAGACAATAAACAAAGCTTGTTGCCCCACCTGCGGCGTGCCCACCACAAGCAGAGATGGAGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCCGAGGTGGAGAAGCTTCGAGCAGCTTTAGGGAAATACGCACCTGGGTCAACGTCCCCTTCGTGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATCGACAATTCAAGGATAATGGATATAGTCAACCAAGCATTGGAGGAACTGATTAAGATGGCTACCACGGGAGAACCATTATGGCTACGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATATGTGAAGGAGTTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTAGATCTCCCTCGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAAGAAATGTTTCCATGTTTGATATCTAAGGCAGCAACAGTTGATGTTATATGCAACGGAGAAGGTCCAAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGATGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAGCAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAAGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTTCACTCCTTGTATCGTACCATTGTGAACAGTGGCCTAGCCTTTGGTGCAAGGCATTGGATTACGACTCTGCAACTTCAATGTGAGCGTCTAGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGGGTTTCTGCCATGCAATTGGCGCATCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATACTGTGCGCTGTTTGTTCTGTATGGTTGCCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGAGATGAAACACGCCGAAGTGAGTGGGATATCATGTCAAGTGGAGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGTAGTTACCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAACCTTGCCATACTGCCTTCGGGATTCTCTATAATTCCTGATGGCCTCGAGTCAAGACCATTGGTGATTACTTCAAGGCAGGAAGAGAAATATACCGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTGACTAATGCATCTCCCACAGCCAAGTTAACAGTGGAGTCTGTGGACTCTGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACATGCTTACAATGTGAAGAGGGCTAG 2136 0.4401 MEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDADADADGDRKKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPTCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQALEELIKMATTGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAEMQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWGFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSQNVLFDFLRDETRRSEWDIMSSGGTVQSIANLSKGQDRGNVVTIQTIKLKENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNASPTAKLTVESVDSVNTLVSCTLRNIRTCLQCEEG 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00241 711 FunFam Homeobox-leucine zipper protein GLABRA 2 226 449 - -
Vimu4g00241 711 SUPERFAMILY Bet v1-like 472 672 - -
Vimu4g00241 711 SMART START_1 226 450 IPR002913 GO:0008289
Vimu4g00241 711 Gene3D - 259 446 IPR023393 -
Vimu4g00241 711 SUPERFAMILY Homeodomain-like 50 116 IPR009057 -
Vimu4g00241 711 Pfam START domain 229 450 IPR002913 GO:0008289
Vimu4g00241 711 SUPERFAMILY Bet v1-like 220 450 - -
Vimu4g00241 711 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Vimu4g00241 711 Gene3D - 45 128 - -
Vimu4g00241 711 SMART HOX_1 57 119 IPR001356 GO:0003677
Vimu4g00241 711 CDD START_ArGLABRA2_like 222 449 - -
Vimu4g00241 711 CDD homeodomain 62 113 IPR001356 GO:0003677
Vimu4g00241 711 MobiDBLite consensus disorder prediction 1 68 - -
Vimu4g00241 711 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Vimu4g00241 711 FunFam Homeobox-leucine zipper protein HDG1 41 131 - -
Vimu4g00241 711 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Vimu4g00241 711 ProSiteProfiles START domain profile. 217 453 IPR002913 GO:0008289
Vimu4g00241 711 Coils Coil 114 144 - -
Vimu4g00241 711 Coils Coil 165 185 - -
Vimu4g00241 711 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 56 706 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00241 Vimu-Chr4 1660886 1666004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00241 19 710 Homeobox Transcription Factor Family AT1G79840 66.239 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu4g00241 START 6.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00241 K09338 - gmx:100809926 1274.23