Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00229 ATGAACGGTGCAGGGAGACAGGGGCTGAGATCTGGTGCGGCGGGTGTGCATCACCAGCGCCAGTACTCAGATAACTTCCTCGATGGCTCTTCCAATGGCAACAGGTGGCTCCAATCGGCTGGCCTCCAACACCTTCAATCCTCCACCAATCAACTTCCTCCCCTTCAGGACTATAATTTATACGGCGGCGGAGGAGCGCAGGGAGGAAGGATGTACCGGAACGCGCAGAGGAGCTTTAACGGAGGGACTGAGTATTATGTGGAGCCTTCCACTCCTCCCGGTGGTTACCGTGCTTCGATGCAGAAAAAGAACGGCGATGATTTGTCTGGTGATTTCAGCCCCGGCTTGTTGGATCTGCATTCGTTCGATACCGAGCTTCTTCCTCCTGAGATGCCAGCCTCCAATGCATATGATGGAAACTCCCTGTATCAACCTGGCCGAGGGAGAAGCTTTGATGACTCTGAACCTTACATGTTGAGCAAACAGACTGGCAGAGCTCGTGCTCCTGAAAACATATTGAAGAGTTTTCCCGCAGAAAAGGAGAAATCTAATTCTGTAGCAAAGATCAAAGTTGTGGTTCGTAAAAGACCAATGAATAAGAAAGAATTAGCAAAAAATGAGGAAGACATTATAGAAACATATTCCAATTCTTTAACAGTGCACGAGACTAAACTGAAGGTGGACTTAACTCAGTATGTAGAAAAGCATGAATTTGTTTTTGATGCTGTTTTGAATGAAGAGGTTACTAATGATGAGGTGTATCGTGAAACCGTAGAGCCTATAGTTCCAATAATCTTTGAACGCACTAAGGCAACATGCTTTGCATATGGACAGACAGGAAGTGGAAAAACGTACACTATGAAGCCACTGCCACTTAAAGCATCAAGGGACATCCTTAGATTGATGCATCATACTTACAGAAACCAGGGATTTCAATTGTTTGTGAGCTTCTTTGAAATATATGGTGGCAAACTTTTTGATCTTCTTAATGATCGAAAAAAACTTTGCATGAGGGAGGATGGTAAGCAGCAAGTTTGCATTGTGGGTTTGCAAGAGTACCGAGTATCAGATGTGGAGAACATCAAAGAACTGATTGAGAAAGGAAATTCCACTAGAAGTACAGGCACCACAGGTGCAAATGAGGAATCGTCACGGTCACATGCCATACTTCAACTTGCTATCAAGAGGTCTGTTGATGGAAATGAATCCAAACCTCCCCGTTTGGTTGGCAAGCTCTCCTTCATAGATCTTGCTGGAAGTGAGCGTGGAGCAGATACCACAGATAATGACAAACAGACAAGAATAGAAGGTGCTGAAATCAATAAGAGCTTACTTGCGCTAAAGGAATGTATAAGAGCTCTTGATAATGACCAAGGACACATCCCTTTCAGAGGCAGTAAACTGACTGAAGTTTTGAGGGATTCATTTGTTGGCAACTCCCGCACAGTTATGATTTCATGCATATCACCAAGCACTGGTTCATGCGAACATACGCTGAATACATTAAGATATGCTGACAGGGTGAAAAGCTTGTCGAAAGGGAACAATACAAAGAAAGAGGCTATATCATCAAATTTCAACCTTAAAGAATCAAGCGCGGTTCCATTATCTTCCATTACTGGATCAGCCTATGAGGATCGCACAACTGATGGATGGCCAGATGAAAATGAAGGGGATGATTTTAGTCCCCCTGAAGAGTATTACGAGCAGGTGAAACCATCTTTGAAGAAAAATGTAAAGATGGAGTCATATGCTACAACTGATGACAAATTGAAGAAACCCAGTGGTCTGATGAAGTGGAAGGACCTCCCAAAAGTTGAGCCTCAAACCACACACGCTGAGGATGATTTAAATGCCCTCTTACAGGAAGAAGAGGACCTAGTAAATGCTCACCGGACACAAGTAGAGGAGACTATGAATATTGTTAGAGAGGAGATGAACCTCTTGGTTGAAGCAGATCAACCAGGGAATCAACTGGATGATTATATAACAAGACTAAATGCCATTCTTTCTCAGAAGGCTGCTGGCATCCTGCAGTTGCAAACCCGTTTAGCTCATTTTCAGAAACGTTTAAAGGAGCACAATGTTTTGGTTTCATCTACTACCGGTTACTGA 2115 0.4369 MNGAGRQGLRSGAAGVHHQRQYSDNFLDGSSNGNRWLQSAGLQHLQSSTNQLPPLQDYNLYGGGGAQGGRMYRNAQRSFNGGTEYYVEPSTPPGGYRASMQKKNGDDLSGDFSPGLLDLHSFDTELLPPEMPASNAYDGNSLYQPGRGRSFDDSEPYMLSKQTGRARAPENILKSFPAEKEKSNSVAKIKVVVRKRPMNKKELAKNEEDIIETYSNSLTVHETKLKVDLTQYVEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSDVENIKELIEKGNSTRSTGTTGANEESSRSHAILQLAIKRSVDGNESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSTGSCEHTLNTLRYADRVKSLSKGNNTKKEAISSNFNLKESSAVPLSSITGSAYEDRTTDGWPDENEGDDFSPPEEYYEQVKPSLKKNVKMESYATTDDKLKKPSGLMKWKDLPKVEPQTTHAEDDLNALLQEEEDLVNAHRTQVEETMNIVREEMNLLVEADQPGNQLDDYITRLNAILSQKAAGILQLQTRLAHFQKRLKEHNVLVSSTTGY 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00229 704 MobiDBLite consensus disorder prediction 544 563 - -
Vimu4g00229 704 MobiDBLite consensus disorder prediction 367 386 - -
Vimu4g00229 704 CDD KISc_KIF2_like 188 509 - -
Vimu4g00229 704 ProSitePatterns Kinesin motor domain signature. 410 421 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vimu4g00229 704 MobiDBLite consensus disorder prediction 366 386 - -
Vimu4g00229 704 PRINTS Kinesin heavy chain signature 411 429 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 PRINTS Kinesin heavy chain signature 268 289 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 PRINTS Kinesin heavy chain signature 377 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 PRINTS Kinesin heavy chain signature 461 482 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 511 IPR027417 -
Vimu4g00229 704 Gene3D Kinesin motor domain 166 514 IPR036961 -
Vimu4g00229 704 FunFam Kinesin-like protein 170 514 - -
Vimu4g00229 704 ProSiteProfiles Kinesin motor domain profile. 188 511 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 PANTHER KINESIN-RELATED PROTEIN 6 570 698 IPR027640 GO:0003777|GO:0007018
Vimu4g00229 704 Pfam Kinesin motor domain 194 510 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g00229 704 SMART kinesin_4 186 517 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00229 Vimu-Chr4 1598739 1604602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00229 188 511 Calmodulin-binding Proteins AT5G65930 33.832 2.71e-44 169