Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu4g00228 | ATGGAGTTTTGGCCGGAGTTTCTTGCGAGCAGCACCGGAAAAGAGTTTGTAGCAGGAGGGTTTGGAGGCACTGCCGGAATAATCTCCGGTTACCCTTTAGACACTCTCCGTGTGATGCAGCAGAACTCCTTCAACACCGCCTCCGCCTTCAGCATCCTCAGAAATGTGGTGGCCAATGAAGGACCAACAGCTCTCTACCGCGGCATGGCGGCACCTTTGGCCTCTGTTACCTTTCAGGCTCGTCACGTGGATGATGGGAATGCTATGGTTTTCCAAATTTACGCAATTCTTTCGAGGGCATTTAGTTCGTCCGATTTGGTTAATGATCCTCCTTCTTACAAGGGTGTTGCTTTAGGAGGATTTTGTAGCGGTGCCATACAGAGTATGATACTATCCCCTGTTGAGTTAGTTAAAATTCGGCTTCAGTTGCAGAACACAGGTCAATCTATAGAAACCCGAAAAGGTCCTATGAAGGTGGCAAAAAACATATGGAAAATAGAGGGTCTTCGTGGCATGTATCGGGGACTTGGGATCACCATGCTAAGAGATGCACCGGCACATGGTCTCTACTTTTGGACATATGAATATGCAAGGGAGAAGCTTCACCCAGGTTGTAGAAGAAGTTGTGAAGAGAGCCTGAATACTATGCTGGTATCAGGAGGATTAGCTGGGGTGGTGAGTTGGGTTTTGAGCTACCCTTTAGACGTTATAAAAACAAGATTGCAGGCTCAAACACTTTCTTCGCAGAAATACAGAGGCATTTTGGATTGCCTTAGGAAGAGTGTTAGAGAAGAAGGATATGAGGTGCTATGGAGGGGTTTAGGAACTGCAGTTGCTAGAGCTTTTGTGGTGAATGGTGCTATATTTTCTGCATATGAGATCACTCTGAGGTGTCTGTTTGATAAATAA | 909 | 0.4609 | MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTASAFSILRNVVANEGPTALYRGMAAPLASVTFQARHVDDGNAMVFQIYAILSRAFSSSDLVNDPPSYKGVALGGFCSGAIQSMILSPVELVKIRLQLQNTGQSIETRKGPMKVAKNIWKIEGLRGMYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCEESLNTMLVSGGLAGVVSWVLSYPLDVIKTRLQAQTLSSQKYRGILDCLRKSVREEGYEVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu4g00228 | 302 | PRINTS | Mitochondrial carrier protein signature | 126 | 144 | IPR002067 | GO:0055085 | |
| Vimu4g00228 | 302 | PRINTS | Mitochondrial carrier protein signature | 173 | 191 | IPR002067 | GO:0055085 | |
| Vimu4g00228 | 302 | PRINTS | Mitochondrial carrier protein signature | 220 | 242 | IPR002067 | GO:0055085 | |
| Vimu4g00228 | 302 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085 | |
| Vimu4g00228 | 302 | PRINTS | Mitochondrial carrier protein signature | 28 | 42 | IPR002067 | GO:0055085 | |
| Vimu4g00228 | 302 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 111 | 200 | IPR018108 | - | |
| Vimu4g00228 | 302 | SUPERFAMILY | Mitochondrial carrier | 12 | 293 | IPR023395 | - | |
| Vimu4g00228 | 302 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 10 | 100 | IPR018108 | - | |
| Vimu4g00228 | 302 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 10 | 299 | - | - | |
| Vimu4g00228 | 302 | FunFam | Mitochondrial arginine transporter BAC2 | 11 | 302 | - | - | |
| Vimu4g00228 | 302 | Pfam | Mitochondrial carrier protein | 117 | 201 | IPR018108 | - | |
| Vimu4g00228 | 302 | Pfam | Mitochondrial carrier protein | 216 | 301 | IPR018108 | - | |
| Vimu4g00228 | 302 | Pfam | Mitochondrial carrier protein | 11 | 78 | IPR018108 | - | |
| Vimu4g00228 | 302 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 211 | 298 | IPR018108 | - | |
| Vimu4g00228 | 302 | Gene3D | Mitochondrial carrier domain | 12 | 302 | IPR023395 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu4g00228 | Vimu-Chr4 | 1594254 | 1596305 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu4g00228 | 1 | 302 | Antiporters | AT1G79900 | 68.212 | 1.79e-140 | 396 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu4g00228 | K15109 | - | gmx:100812034 | 528.48 |