Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00227 ATGAGAAGTGTGTTTCCATCTCTATTGTTCTTCCTCTTTCTACTTCAGCCCTCTGAAGGTGAACACATTGGCATTTACTGGGGTCAAAAGGCCAATGAGGGAAACCTGACAGAAACCTGTGCAACAGGAAAATACTCCCACGTCAACATAGCCTTCCTTTCCACCTTTGGGAAGGGCCAAACCCCAAAACTGGACCTGGCTGGTCATTGTGACGCATCTACTAATGGGTGCACTGAGATGGGAAGAGAAATTAGGAATTGTCAAAAGCAAGGGATCAAGGTGATGCTTTCTATTGGAGGAGGAAGTGGTGATTACTCTATAATTTCCCTTGAGGATGCCAAGAATGTTTCGGACTACTTGTGGAACAATTTCCTTGGTGGTTCATCCTCATCACGCCCATTTGGGGATGTAGTCTTAGATGGCATTGATTTTGACATACAGACAGGTGAATCATCATTCCTGGGAAACCTTTCCCTTCAACTCATTTCATATTCACAGACACGTAAAGTGTACCTGTCAGCAGCTCCTCAGTGTCCATTTCCTGATGCTAAGCTGGATTCAGTCCTTGCTACTGGCCTTTTTGACTATGTCTGGATACAATTCTACAACAATCCTCCGTGCCAATATACCGACAACAATTTCGATAACCTCCTTAAAGCATGGAACCTTTGGTCCACCTCATTGAAGGCAGGGAGAATGTTTCTGGGGTTACCAGCAGATCAAGCTGCTGCTGGAAGCGGTTATGTTCCAGCTGATGTATTAGTTTCTAAGATCTTGCCTGAGATAAAAAAGTCATCAAATTATGGAGGTGTTATGTTGTGGTCAAGGTACGAGGATGAAACGAGTGGATACAGCTCCTACATTATAAATTTTCACATAAATCAGACTGTAGATTCTCTATGCACACAGCAAAGCCTTCCTGCATGCAGGAGCTCTGAAGGTGGTTTTGTGGAAAGTTTTGGTAACATGTCCACCGTTGGCATACAAGTTTATGCCGGCAGCAATGGTACGCAGTGCTGTGAGATCATATGTAGGAACAATTGTTCGTGTCAAGCATATGCCCCAATAAACCGCAAAAACAATACCGGATGCCAGATATGGCTCAAAGGAACAGAATTGGTTAGAGCTTCTGCAGACAAATCACTGCCTATCTATGTTTCTGTTGCACTGCTCCCAGAAGACAAAGGTACGTCCAGATTCCCTACCACCACAGTAAACCGGTGGTACATATGGCTCATCGTTGGGGTGGCAGCAGCATTTGCAATACCTGTAATTTTCTCTTTATGGCGTGCCTTGTGGAGAAACTACAAAGCTAAAGTGGAGAGAAAGAAGATGCAGGAGAAGTTATTACATGATATTGGAGGTAATTCTAGAAAAAGTAAAAACAACGGAAAGACAAGCAATGGGGTTGAAATATTCACCTTTGAAACCATTGTTGCTGCAACAGAGAATTTCTCAGCGGCCAATAAGCTAGGAGAGGGTGGATTTGGTCCTGTTTATAAGGGAACACTGCGTGATCAGCAAGAAGTAGCAATCAAGCGACTTTCTAAAAGTTCAGGACAAGGGGTGATAGAATTTAAGAATGAAGCCAAACTTATGGCCAAACTCCAACACACTCATCTTGTAAAGCTTCTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTGGTTTATGAATACATGCCTAACAAGAGCTTAGACTTCTACCTATTTGGTAAGACTGTGCCAGATGTTAGCATGAAGTATCATTTTAACAATCATGCTGACTTTATAACAGATTCAGCCAGAAAGAATTTGCTAGACTGGCAAAAACGGTTGAACATCATTGGAGGCATTGCTCAAGGACTTCTTTATCTGCACAAGTACTCGAGACTAAAGGTGATACATCGAGATCTGAAAGCAGGTAATATATTACTTGATCACGAGATGAATCCTAAGATATCTGACTTTGGCATGGCTCGAATATTCGGTGTAAGAGCATCAGAAGAAAACACAAACAGAATTGTTGGCACATATGGATACATGGCTCCAGAGTATGCAATAAACGGTGTTGTGTCCATCAAAATAGATGTATTCAGCTTTGGTGTGCTGCTGCTAGAAACACTTAGTTGCAAGAAAAATAACAGTCGTTATGATTCGGATCGTCCACTCAACCTCATAGGATACGCGTGGCAGCTCTGGAATGAAGGCAGAGCTCTGGGGTTAATAGACCCAGATTCGTATGAACTATGTCCTCAGAATGCAGTTTTGAGATGTATTCATATCGGCCTGCTGTGTGTACAAGATCGAGCAACAGATAGACCAACCATGGAAGACATTGTTTCATTTCTATCAAATGATACAATGCAACTTCCCCAACCAAAGCAGCCAGCGTTCTTCATCAATGTGGTTGTGGAAGACTCGGTGCTTCCTTACAGCAGACAAGAACTTCATTCCTCAAATGACTTAACACTTTCTAGCACACATGGAAGATAA 2475 0.4255 MRSVFPSLLFFLFLLQPSEGEHIGIYWGQKANEGNLTETCATGKYSHVNIAFLSTFGKGQTPKLDLAGHCDASTNGCTEMGREIRNCQKQGIKVMLSIGGGSGDYSIISLEDAKNVSDYLWNNFLGGSSSSRPFGDVVLDGIDFDIQTGESSFLGNLSLQLISYSQTRKVYLSAAPQCPFPDAKLDSVLATGLFDYVWIQFYNNPPCQYTDNNFDNLLKAWNLWSTSLKAGRMFLGLPADQAAAGSGYVPADVLVSKILPEIKKSSNYGGVMLWSRYEDETSGYSSYIINFHINQTVDSLCTQQSLPACRSSEGGFVESFGNMSTVGIQVYAGSNGTQCCEIICRNNCSCQAYAPINRKNNTGCQIWLKGTELVRASADKSLPIYVSVALLPEDKGTSRFPTTTVNRWYIWLIVGVAAAFAIPVIFSLWRALWRNYKAKVERKKMQEKLLHDIGGNSRKSKNNGKTSNGVEIFTFETIVAATENFSAANKLGEGGFGPVYKGTLRDQQEVAIKRLSKSSGQGVIEFKNEAKLMAKLQHTHLVKLLGFCIQRDERILVYEYMPNKSLDFYLFGKTVPDVSMKYHFNNHADFITDSARKNLLDWQKRLNIIGGIAQGLLYLHKYSRLKVIHRDLKAGNILLDHEMNPKISDFGMARIFGVRASEENTNRIVGTYGYMAPEYAINGVVSIKIDVFSFGVLLLETLSCKKNNSRYDSDRPLNLIGYAWQLWNEGRALGLIDPDSYELCPQNAVLRCIHIGLLCVQDRATDRPTMEDIVSFLSNDTMQLPQPKQPAFFINVVVEDSVLPYSRQELHSSNDLTLSSTHGR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00227 824 SUPERFAMILY (Trans)glycosidases 19 288 IPR017853 -
Vimu4g00227 824 SMART serkin_6 485 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00227 824 Pfam Glycosyl hydrolases family 18 23 279 IPR001223 GO:0005975
Vimu4g00227 824 Pfam PAN-like domain 334 369 IPR003609 -
Vimu4g00227 824 CDD GH18_hevamine_XipI_class_III 23 290 IPR045321 -
Vimu4g00227 824 Gene3D Glycosidases 22 292 - -
Vimu4g00227 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 451 560 - -
Vimu4g00227 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 561 785 - -
Vimu4g00227 824 FunFam Acidic endochitinase SE2 21 291 - -
Vimu4g00227 824 Gene3D Transferase(Phosphotransferase) domain 1 584 789 - -
Vimu4g00227 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vimu4g00227 824 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 311 806 - -
Vimu4g00227 824 Pfam Domain of unknown function (DUF3403) 779 824 IPR021820 GO:0004674
Vimu4g00227 824 Gene3D Phosphorylase Kinase; domain 1 458 560 - -
Vimu4g00227 824 SUPERFAMILY Protein kinase-like (PK-like) 468 810 IPR011009 -
Vimu4g00227 824 ProSiteProfiles Protein kinase domain profile. 485 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00227 824 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 21 295 IPR001223 GO:0005975
Vimu4g00227 824 Pfam Protein tyrosine and serine/threonine kinase 488 777 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00227 Vimu-Chr4 1590043 1593213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00227 458 792 Receptor kinase-like Gene Family AT4G23230 54.252 1.13e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g00227 PK_Tyr_Ser-Thr 6.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00227 - - gmx:100794508 1159.44