Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00220 ATGAAGTATGATTCTCTAAGAACCATGCCCAAGAAAATTCGAGATTACCTCTTCAAAATCAAAAGCCCTCGCCCTCAAATCCGATTACCCTCTAAGAACTGGATTCTGTCTGGTTGCAAACATCCTAGGACACCTTCCTTTGCCTTGTACAGTGCTACAAACGAACCTTCTCGTCGTCGTCGTCATCATCACCATCAAGAACACGTTGTTCGTAATAACAACAACAATCACCACCGCAAGGACGATGCAGCCACCTTAGCAGACGTTGACCGTTTCCTCTTAGAGAATTTCAAGTCTTTGTACCTCAAAGACGACGATGAAACCTTAGACACCAAAAGGGTCTTCGTAGGTGACGACCAAAACCACGTAGAAACAACATCGCCACGAGATGTTCGTGGGCCCACCCGGTTCTTCGTGAAGCCTGGGTTCTCTGGGTCACTAGTGGAGGACGCTCTCACAAATACCACCATTAATACAGCAACCAGTGACGAAGTAGGATCGGTGTCAACTGTCTCAACCCTCTACGATGTTTCGTCTTCCAGTTCTTACGAGAAGGAGGGTGCGGATCACGCGCTTCCGGATGATAGCATCGCTCTCTTGACTCACTCCACCAGCCCTTACGACGATTTCAGACGTTCCATGCAAGAAATGGTGAACAACCATGAAGGGGTGGTTGATTGGGATTTCATGGAGGAGCTCTTGTTTTCTTACCTCAATCTCAACCACAAAAAATCGCATAAGTTCATCCTCGGTGCTTTCGTCGATGTCATCACCGCCATGCGTCGGAGTAATTCCGAACCACCTTCCGACAAGCCACGTAGCGTTCGAACTGTTAGGAGTGTGACCAAAAACATAACGTTAGGATTTGGGTCTTCTCTGTAA 882 0.4751 MKYDSLRTMPKKIRDYLFKIKSPRPQIRLPSKNWILSGCKHPRTPSFALYSATNEPSRRRRHHHHQEHVVRNNNNNHHRKDDAATLADVDRFLLENFKSLYLKDDDETLDTKRVFVGDDQNHVETTSPRDVRGPTRFFVKPGFSGSLVEDALTNTTINTATSDEVGSVSTVSTLYDVSSSSSYEKEGADHALPDDSIALLTHSTSPYDDFRRSMQEMVNNHEGVVDWDFMEELLFSYLNLNHKKSHKFILGAFVDVITAMRRSNSEPPSDKPRSVRTVRSVTKNITLGFGSSL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00220 293 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 80 260 IPR038933 GO:0045892
Vimu4g00220 293 NCBIfam uncharacterized plant-specific domain TIGR01568 197 260 IPR006458 -
Vimu4g00220 293 Pfam Transcriptional repressor, ovate 203 260 IPR006458 -
Vimu4g00220 293 ProSiteProfiles OVATE domain profile. 199 259 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00220 Vimu-Chr4 1543551 1544432 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vimu4g00220 Ovate 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00220 - - vum:124828607 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00220 4 1543551 1544432 Vimu4g00220 4 1543551 1544432 ECH
Vimu4g00220 4 1543551 1544432 Vimu11g02829 11 48352664 48353637 PCT