Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00218 ATGAGCGTGGTTGGTTTTGATTTTGGTAATGAAAGCTGCATTGTGGCGGTTGCAAGGCAGAGGGGGATTGATGTTGTGCTCAATGACGAGTCCAAGCGAGAAACACCTGCAATTGTATGCTTTGGTGACAAACAGCGGTTCCTTGGGACAGCTGGCGCTGCATCTACTATGATGAACCCAAAGAATTCAATCTCACAGATAAAGAGGTTAATTGGAAGACAATTTGCAGATCCAGAATTGCAGCGAGATCTGAAGACTTTCCCTTTTGTTGTCACTGAAGGGCCTGATGGATATCCATTGATTCATGCAAGGTACTTGGGTGAAGTGAAAACATTTACACCTACCCAAGTATTTGGAATGATGTTATCAAACCTTAAAGAAATAGCTGAGAAAAATCTGAATGCTGCTGTTGTTGATTGTTGCATTGGTATTCCACTTTATTTTACTGATCTGCAGAGGAGGGCAGTCTTGGATGCAGCCACTATAGCAGGGTTGCACCCACTTCGCCTATTTCATGAAACAACAGCAACTGCATTGGCTTATGGAATTTATAAGACTGATCTTCCAGAAAATGATCAGCTGAATGTTGCCTTTGTGGATGTTGGACATGCCAGCATGCAAGTGTGCATTGCTGGGTTTAAAAAGGGTCAGCTGAAAGTATTGTCCCAGTCATTCGACAGGTCCCTAGGTGGGAGGGACTTTGACGAGGTTCTGTTCAATCATTTTGTTGCTAAGTTTAAGGAGGACTACAAGATTGACGTGTTGCAAAATGCTAGGGCTTGTCTAAGATTGAGGGCTGCTTGTGAAAAGCTGAAGAAGGTTCTTAGTGCTAATCCAGAGGCACCTTTAAACATAGAGTGCTTGATGGATGAGAAGGATGTCAGAGGCTTTATCAAGCGTGATGAGTTTGAGCAACTAAGTCTTCCGATTCTGGAACGAGTTAAGGGACCATTGGAAAAGGCACTTGCAGAGGCAGGTCTTACAGTTGATAATATTCACATGGTCGAGGTGGTTGGTTCTGGATCCCGTGTACCAGCTATAAATAAAATATTGACAGAGTTTTTCAAAAAGGAGCCTAGGCGCACAATGAATGCAAGTGAGTGTGTTGCCAGGGGTTGTGCATTGCAGTGTGCAATTCTCAGTCCAACTTTTAAAGTGAGGGAGTTTCAGGTCAATGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGGTTCAAGCTCTGATGCACAGGAAAGTGGGCCAGATAGTAAACAAAGTACCCTTGTATTCCCCAAGGGAAATCCCATACCAAGTGTCAAGGCACTGACAATCTACAGGCAAGGAACGTTTTCTATTGATGTTCAATATGATGATGTGAGTGGTTTGCAAACACCAGCGAAGATCAGCACATACACTATTGGCCCTTTCCAATCAACAAAAGGTGAAAAAGCAAAAATTAAAGTGAAAGTTAGGCTGAATGTACATGGAATTGTATCTATCGAATCTGCAACTCTCTTGGAAGAGGAAGAAATTGAGGTTCCTGTTTCCAAAGAATCAGTTGGGGAAAATGCCAAGATGGAAACTGATGAACCTGCTGCCGGTGCTACCACACCGCCTAGTACCAATGACAATGATGTTAACATGCAAGATGCTAATGCCAATGCAACTGCTGATGTCCCTGGAGCAGAAAATGGTACCTCTGAGGCAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGCTGAGGCTCCAAAGAAAAAGATTAAGAAAATAAATGTTCCTGTAGCGGAGTTAGTTTATGGAGCAATGTCAGCTACGGATGTTCAGAAAGCTGTCGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAAGACAAGAAAAATGCTGTAGAGGCTTATGTTTATGACATGAGAAACAAGCTTAGTGACAAATACCAAGAGTTTGTCATTGATTCAGAGAGAGAAGCATTCACTGCTAAACTTCAGGAGGTGGAAGACTGGCTATATGAAGACGGTGAAGATGAAACTAAAGGTGTATACATTGCCAAACTAGAAGAGCTGAAAAAGCAAGGTGATCCAATTGAAGAGCGTTACAAAGAATACACGGAGAGGGGTTCAATAGTTGAACAACTCGTCTATGTTATAAATAGTTATAGAGAAGCTGCAATGTCAAGTGATCCCAAATTTGATCACATTGACATCAGTGAGAAACAGAAGGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTAAGGGAGAAAAAGCATCACCAGGATACCCTTCCAAAATATGCCTCCCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCAATTATGACAAAACCAAAGCCACCCCCACCAAAGCCAACCACTCCAGAAGCACCAGCAACCCCACCTCATCAGGGCGGTGAACAGCAACAGCAGCCGCAACATTCACCAGCTCAGGAGAATCCTAATGCCACCAGTAATGAAAATGCAGGGGACAATGGTAATCCGGCCCCGCCACCAGCATCTGCCGAACCAATGGAGACCGAGAAGTCAGAGAACACAGACTCTGCTTAA 2592 0.434 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFLGTAGAASTMMNPKNSISQIKRLIGRQFADPELQRDLKTFPFVVTEGPDGYPLIHARYLGEVKTFTPTQVFGMMLSNLKEIAEKNLNAAVVDCCIGIPLYFTDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLSQSFDRSLGGRDFDEVLFNHFVAKFKEDYKIDVLQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEAGLTVDNIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSSSDAQESGPDSKQSTLVFPKGNPIPSVKALTIYRQGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSTKGEKAKIKVKVRLNVHGIVSIESATLLEEEEIEVPVSKESVGENAKMETDEPAAGATTPPSTNDNDVNMQDANANATADVPGAENGTSEAGDKPVQMDTDTKAEAPKKKIKKINVPVAELVYGAMSATDVQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLSDKYQEFVIDSEREAFTAKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYTERGSIVEQLVYVINSYREAAMSSDPKFDHIDISEKQKVLNECVEAENWLREKKHHQDTLPKYASPVLLSADIRKKAEAVDRFCKPIMTKPKPPPPKPTTPEAPATPPHQGGEQQQQPQHSPAQENPNATSNENAGDNGNPAPPPASAEPMETEKSENTDSA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00218 863 MobiDBLite consensus disorder prediction 810 839 - -
Vimu4g00218 863 Gene3D Actin; Chain A, domain 4 230 313 - -
Vimu4g00218 863 Coils Coil 684 704 - -
Vimu4g00218 863 Gene3D - 598 709 IPR029048 -
Vimu4g00218 863 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vimu4g00218 863 Pfam Hsp70 protein 3 699 IPR013126 GO:0005524|GO:0140662
Vimu4g00218 863 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vimu4g00218 863 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 631 IPR029047 -
Vimu4g00218 863 MobiDBLite consensus disorder prediction 528 548 - -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 14 387 596 - -
Vimu4g00218 863 CDD HSPA4_like_NDB 2 381 - -
Vimu4g00218 863 ProSiteProfiles Ig-like domain profile. 345 463 IPR007110 -
Vimu4g00218 863 MobiDBLite consensus disorder prediction 789 806 - -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 4 111 206 - -
Vimu4g00218 863 MobiDBLite consensus disorder prediction 509 580 - -
Vimu4g00218 863 Gene3D - 38 113 - -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 332 348 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 2 15 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 30 42 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 140 160 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 363 383 - -
Vimu4g00218 863 PRINTS 70kDa heat shock protein signature 477 493 - -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vimu4g00218 863 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 600 698 IPR029048 -
Vimu4g00218 863 Gene3D - 186 360 - -
Vimu4g00218 863 PANTHER HSC70CB, ISOFORM G-RELATED 1 854 - -
Vimu4g00218 863 MobiDBLite consensus disorder prediction 783 863 - -
Vimu4g00218 863 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 596 IPR029047 -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 4 1 79 - -
Vimu4g00218 863 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 711 798 IPR029048 -
Vimu4g00218 863 FunFam Heat shock 70 kDa protein 4 598 708 - -
Vimu4g00218 863 Gene3D - 5 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00218 Vimu-Chr4 1521960 1526160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00218 4 434 Calmodulin-binding Proteins AT1G16030 35.253 5.39e-86 286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00218 4 1521960 1526160 Vimu4g00218 4 1521960 1526160 ECH
Vimu4g00218 4 1521960 1526160 Vimu11g02828 11 48345119 48349660 PCT