Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00216 ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTAACCAACGAGGTTATGGTTATCCGAATTCTCCATATTCCCTCCCTGTTAATACTGAATATGCCCATCATCATGATGAAGATGAAGAACAAGAACAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCTCAAAAGGATGGGGATGAAGAAAATGACATAGTTGGAGTTGGTGATGAAAATGATGATGAGGAAGAGGAGGTAGAGGATAATAAGCAGATTGGTTATTATGCCACTAAGAGTGAAGATGATTTGGAGTGGCCTCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTCCTCGTGTGCCAGCGCCATCAGCTGCAGCTCCAGTTCCTACTGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTGCTTGATGCATGGGGTGATACGTTTCTTCAACTTGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATTGAAAGGACGGACACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGAGAGTGATGGTGGAGATTGCAAATGGGTTTATTTTAAAAGAATGGATGAGCTAATGAGTTCACCCCCTCAACAAGTTGGTATCTCTTGTGGTTTGGACTCGGGAGATTATGTTTTTATGAACCCTGGAGTTTATTTGAATCAAGCTAATGGATTGGATGAATTGAGGGATAGTCCTGAGAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGTGAAGCTTCTTCCTTCAGGTTGCTTGCTGATTCCATACAAAAATTCAGTAGGATATATGAGAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAGATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA 1164 0.4141 MDGIEDDASYHPNPYRIISNQRGYGYPNSPYSLPVNTEYAHHHDEDEEQEQLEGDDEVDQSNSLQLPQKDGDEENDIVGVGDENDDEEEEVEDNKQIGYYATKSEDDLEWPPKKQKLKSLISTYELAPRVPAPSAAAPVPTAPKPSSGGRNSLTDWTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQESDGGDCKWVYFKRMDELMSSPPQQVGISCGLDSGDYVFMNPGVYLNQANGLDELRDSPENVESTGEEGSDGLQLQAKKRKGRSSGEASSFRLLADSIQKFSRIYEKIENNKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRNDENEDSAENGM 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00216 387 MobiDBLite consensus disorder prediction 132 151 - -
Vimu4g00216 387 MobiDBLite consensus disorder prediction 279 313 - -
Vimu4g00216 387 FunFam trihelix transcription factor ASIL2 156 218 - -
Vimu4g00216 387 MobiDBLite consensus disorder prediction 1 100 - -
Vimu4g00216 387 MobiDBLite consensus disorder prediction 371 387 - -
Vimu4g00216 387 MobiDBLite consensus disorder prediction 76 93 - -
Vimu4g00216 387 Gene3D - 156 218 - -
Vimu4g00216 387 MobiDBLite consensus disorder prediction 359 387 - -
Vimu4g00216 387 Coils Coil 329 360 - -
Vimu4g00216 387 Pfam Myb/SANT-like DNA-binding domain 155 242 IPR044822 -
Vimu4g00216 387 Coils Coil 362 382 - -
Vimu4g00216 387 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 138 378 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00216 Vimu-Chr4 1513882 1515045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00216 303 385 Trihelix Transcription Factor Family AT3G14180 39.759 5.29e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu4g00216 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00216 - - gmx:100814194 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00216 4 1513882 1515045 Vimu4g00216 4 1513882 1515045 ECH