Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00216 | ATGGATGGCATTGAGGATGATGCGAGCTATCACCCTAACCCATATCGCATCATCAGTAACCAACGAGGTTATGGTTATCCGAATTCTCCATATTCCCTCCCTGTTAATACTGAATATGCCCATCATCATGATGAAGATGAAGAACAAGAACAGTTAGAAGGAGATGATGAGGTTGATCAAAGTAACAGCCTTCAGCTTCCTCAAAAGGATGGGGATGAAGAAAATGACATAGTTGGAGTTGGTGATGAAAATGATGATGAGGAAGAGGAGGTAGAGGATAATAAGCAGATTGGTTATTATGCCACTAAGAGTGAAGATGATTTGGAGTGGCCTCCAAAGAAGCAAAAGCTGAAGAGTTTGATTTCAACCTATGAACTTGCTCCTCGTGTGCCAGCGCCATCAGCTGCAGCTCCAGTTCCTACTGCTCCCAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCATGAGACATTTGTTCTGCTTGATGCATGGGGTGATACGTTTCTTCAACTTGGAAGGAAGAGTCTTCGATGTGAGGAATGGCAGCAAGTATCGAAAATGGTAGCACAAGTTTCAAAAATTGAAAGGACGGACACTCAGTGTAGAAACCGCCTTGACACACTGAAGAAAAAATACAAGAAGGAGAAGGCTAAATTTCAAGAGAGTGATGGTGGAGATTGCAAATGGGTTTATTTTAAAAGAATGGATGAGCTAATGAGTTCACCCCCTCAACAAGTTGGTATCTCTTGTGGTTTGGACTCGGGAGATTATGTTTTTATGAACCCTGGAGTTTATTTGAATCAAGCTAATGGATTGGATGAATTGAGGGATAGTCCTGAGAATGTGGAATCTACCGGTGAAGAAGGTTCAGATGGACTTCAACTTCAAGCAAAGAAAAGGAAAGGAAGGAGCAGTGGTGAAGCTTCTTCCTTCAGGTTGCTTGCTGATTCCATACAAAAATTCAGTAGGATATATGAGAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAGATGAGAATGGATTTCCATAAGGAATTGGAAACACAGAAGAGGCAGATATTAGGGAATTTGCAGAGTGAGATTTCAAAACTAGAGCAGAGAAATGATGAGAACGAAGATTCTGCTGAGAATGGTATGTGA | 1164 | 0.4141 | MDGIEDDASYHPNPYRIISNQRGYGYPNSPYSLPVNTEYAHHHDEDEEQEQLEGDDEVDQSNSLQLPQKDGDEENDIVGVGDENDDEEEEVEDNKQIGYYATKSEDDLEWPPKKQKLKSLISTYELAPRVPAPSAAAPVPTAPKPSSGGRNSLTDWTEHETFVLLDAWGDTFLQLGRKSLRCEEWQQVSKMVAQVSKIERTDTQCRNRLDTLKKKYKKEKAKFQESDGGDCKWVYFKRMDELMSSPPQQVGISCGLDSGDYVFMNPGVYLNQANGLDELRDSPENVESTGEEGSDGLQLQAKKRKGRSSGEASSFRLLADSIQKFSRIYEKIENNKRQQMMELEKMRMDFHKELETQKRQILGNLQSEISKLEQRNDENEDSAENGM | 387 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 132 | 151 | - | - | |
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 279 | 313 | - | - | |
Vimu4g00216 | 387 | FunFam | trihelix transcription factor ASIL2 | 156 | 218 | - | - | |
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 1 | 100 | - | - | |
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 371 | 387 | - | - | |
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 76 | 93 | - | - | |
Vimu4g00216 | 387 | Gene3D | - | 156 | 218 | - | - | |
Vimu4g00216 | 387 | MobiDBLite | consensus disorder prediction | 359 | 387 | - | - | |
Vimu4g00216 | 387 | Coils | Coil | 329 | 360 | - | - | |
Vimu4g00216 | 387 | Pfam | Myb/SANT-like DNA-binding domain | 155 | 242 | IPR044822 | - | |
Vimu4g00216 | 387 | Coils | Coil | 362 | 382 | - | - | |
Vimu4g00216 | 387 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR ASIL2 | 138 | 378 | IPR044823 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00216 | Vimu-Chr4 | 1513882 | 1515045 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00216 | 303 | 385 | Trihelix Transcription Factor Family | AT3G14180 | 39.759 | 5.29e-10 | 58.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Vimu4g00216 | Myb_DNA-bind_4 | 1.3e-20 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00216 | - | - | gmx:100814194 | 553.132 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g00216 | 4 | 1513882 | 1515045 | Vimu4g00216 | 4 | 1513882 | 1515045 | ECH |