Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00202 ATGGATGTTACTTCTCTGGGTTCAAATAGCAATACCCAAACTGACCAACACCCTTTGCTGATGGAGCAACCGGAAAATCATAATGGTCGTCAGCACGTAATTGACATTACTATGAATGATGAAGCTCTAACTATGTCTTCCCATATTGATCAACACTCTGAAATGCATTTACCGCAGAGTGGAGATCAACCAGCTGTGGACACACAAGATTCCACTCATCAAACATCTTCATATTCAGCATCCAGATTAAACTCTAGAAATTCAGCTTCACTAAGAAGAGGTGAAGGATACGGTCATCGTGGGCGGAGTCCATTGAATTCTGGATTGTGGATTTCTGTTGAGCTTTTTGTCACTGTGAGTCAGATCATAGCATCTATAGTCGTTTTGTCACTGTCCAGGAATGAAAATCCCCAAGCTCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTATATTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATTCCTCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACCTATACTGCCATCTATGTTTCTCATGTCTCAGACGAGGAGAATGGTAATGCTACACAATCAGCCACAAGAAACCCTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTTGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTTGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAGTTATATAGCTGTATCGGATATGCAATGCCATTTATACTCTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCATAATAGAGGAGCAACAGTGGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAATTGAAGAACAATGAAAACGTTGATGATCAGGATGTCAATGCAGCTACGGATGAGGGTGGAATTTTGGCTGCAGGAACAGAAAAAGAGCGAGTTATTTCAGGAGAAGACGCTGTTTGTTGCATTTGCTTAGCAAAATACGCAGATGATGATGAGCTTAGAGAGTTACCTTGCTCTCACGTTTTTCATGTAGTGTGTGTTGACAAATGGTTAAAGATAAATGCATCATGCCCTCTTTGTAAAACAGAAGTTGGTACGACTGATGGAGACTCACCTTCAGCCTGGGACTCCAGTACTCATTAG 1251 0.4133 MDVTSLGSNSNTQTDQHPLLMEQPENHNGRQHVIDITMNDEALTMSSHIDQHSEMHLPQSGDQPAVDTQDSTHQTSSYSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELFVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDSSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGNATQSATRNPIIPGAFTSRLNGFVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYSCIGYAMPFILCATICCCLPCIISVLGIREDFSHNRGATVESINALPIFKFKLKNNENVDDQDVNAATDEGGILAAGTEKERVISGEDAVCCICLAKYADDDELRELPCSHVFHVVCVDKWLKINASCPLCKTEVGTTDGDSPSAWDSSTH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00202 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 400 - -
Vimu4g00202 416 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g00202 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 406 IPR013083 -
Vimu4g00202 416 MobiDBLite consensus disorder prediction 54 99 - -
Vimu4g00202 416 FunFam E3 ubiquitin-protein ligase 339 406 - -
Vimu4g00202 416 SMART ring_2 356 396 IPR001841 -
Vimu4g00202 416 SMART ringv_2 355 397 IPR011016 GO:0008270
Vimu4g00202 416 MobiDBLite consensus disorder prediction 54 91 - -
Vimu4g00202 416 SUPERFAMILY RING/U-box 348 405 - -
Vimu4g00202 416 MobiDBLite consensus disorder prediction 1 25 - -
Vimu4g00202 416 Pfam Ring finger domain 356 397 IPR001841 -
Vimu4g00202 416 ProSiteProfiles Zinc finger RING-type profile. 356 397 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00202 Vimu-Chr4 1391466 1394135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00202 1 407 C3H Transcription Factor Family AT1G80400 55.556 2.41e-162 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00202 - - gmx:100819729 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00202 4 1391466 1394135 Vimu4g00202 4 1391466 1394135 ECH