Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00201 ATGGGTGTTTCTCTTCCTCCCAGAGAGGCTAACCTCTTCAAGCTTATTGTTAAATCCTATGAAACCAAGCAATACAAAAAGGGCCTTAAAGCAGCCGATGCCATTTTGAAAAAATTCCCAGATCATGGAGAAACTTTATCAATGAAGGGGTTGACGTTGAATTGCATGGATCGTAAGTCCGAGGCATATGAATTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCGCACAGAGAATACAGGGAGGCAATAAAGTGCTATCGCAATGCATTGAAAATAGATCCTGACAATATTGAAATATTGCGGGACTTGTCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGACAACAACTTCTGACACTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAGTGTGACAGTGTGTGGTCGGATTGGTTCTTGTCCTCTGATTTCCTTCATTGATTACCTTGCCATTCCTGTTCCCGGTGCTCACAGAAGTGACTATGAGGACATCAGTGTGGGTAAGAAAATTGTATTAGCTATTCAGACGCTTGGTGTTGTCTTTGGTGCCGTTGGAACAAGTCCCTTGTATACCTTCAGTGTTATGTTTAGAAAGGCCCCTATTAATGGAAATGAAGACATTCTTGGAGCTTTATCACTTGTCTTGTACACATTAATCTTGATTCCTTTGTTGAAGTATGTCCTGGTGGTTCTGTGGGCCAATGATGATGGTGAAGGTGGTACGTTTGCCTTGTACCCATTGATCTGTCGTCATGCTAAGGTTAGTCTTCTCCCCAATCAGTTACCATTAGATACCCGTATATCAAGCTTTAGGCTTAAGGTGCCATCCCCTGAGCTTGAAAGGTCATTAAAATTCAAGGAAAGACTTAAGACTTCTCTGACTCTGAAGAAGATTATACTAATATTAGTTCTTACTGGTACTTCCATGGTGATTGCTAATGGTGTTGTTACATCGGCAATTGTGCAAAAGTATGGAACAAGTAAAGTGGGACTTGCAATAGGACCTGCTTTGTTCTTATGTGCATTAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACTTTGGAAGATGATTATCCTCCAGAAAATGAACGGTGTGAACATGGAGAAATGCTTTTGTATAAGATCTCCTTGTTGGAAGAATGTGGATTTTTCCAGAAAGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCCTATAAAGAGCAGGAGGTCTCACTTCTAGTCAAGCTTGGTCGCTTAGAAGAAGGGGAGAAATTGTACCGCACATTACTTAGCATGAACCCTGACAATTATAGATATTATGAAGGCCTCCAAAAATGTGTTGGATTAGATTCAGAAAATGGCCATTTTTCTCCTGATGAAATAGAGCAGTTAGATGCCTTGTACAAAACACTTGAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTTTTACAAGGTGACAAGTTTCGAGAAGCAGCAGATAGTTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTTTTCTCCGATCTTTCTTCGTTATACAATCAACCTAGGAAGGCAGATGTTTTGGAACAGATCATTCTTGAGTTAGAGAGTTCACTTAAGTCCACTGGTCAATACCCTGGACGGATGGAAAAAGAGCCACCTTCAACTCTGATGTGGACATTGTTCTTCTTGGCTCAGCATTATGACAGACTGGGCCAATATGAAATTGCTCTTTCTAAAATTGATGAGGCTATTTGTCACACGCCTACTGTCATTGATCTGTATTCGGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGATGAAGCTAGATGTATGGATCTTGCTGATCGATATGTAAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAACTGCTGTATTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTAAAGAAATTTCTAGCTGTGGAGAAGCATTATGCTGATATTACAGAAGATCAATTTGATTTTCATTCATACTGCTTACGGAAAATGACATTGCGTCCATACGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCGCATGCATACTTTCATAAAGCAGCTGTTGGAGCTATCAGATGCTATATCAAATTGCATGATTTTCCTTCAAAGTCAACAGCCGAGGAAGATGATGACATGTCTAAGTTGCTTCCTTCACAGAAAAAGAAAATGAGGCAAAAACAAAGAAAGGCAGAAGCTAGAGCTAAGAAAGAGGCAGAAATAAAAAATGAAGAATCAAGTGCTGGTGGGGTATCAAAGTCTGGGAAACGGCATGCAAAACCTGTTGATCCTGATCCACGTGGTGAAAAATTGATGCAGGTTGAAGATCCGTTGTTGGAAGCCACAAAATACTTGAACCTGCTTCAGAAGAATTCACCTGACTCATTGGAGACACACATTCTCTCTTTTGAGTTATATATGAGAAAACAGAAAATTTTACTTGCCTTCCAGGCTGTTAAGCAGTTACTGAGGTTGGATACTGAACACCCTGATTCTCATCGTTGTCTGATTACATTCTTCAATAAAGTGGGATCCATGAATGTTCCTGTGACTGACAGTGAGAAACTTGTTTGGAGTGTCTTGGAAGCTGAGCGCCAAACGATTAGTCAGCTGCATGGGAAATCTCTGTTTGAGACAAATAATTCTTTCCTTGAAAAACATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGGGAAATGTTGTATGTTTTGGATCCCAACAGAAGGCCTGAGGCTGTCAAGTTGATTGAAGGGTCAACAAATGACCTTGTGCCAAGAAATGGTGTGCTTGGACCGATCGGGGAATGGAAACTTAAAGATTGTATTGCAGTTCATAAGCTTCTTGGAACAGTTCTTGTTGATGAAGATGCTGCATTAAGATGGAAAGAGCGTTGCGCTAAATTTTTCCCGTACTCCACCTACTTTGAGGGCAGTCGTAGCTCTGCCTTTAATCAGATAGGCAAGAGCACTGAAAATGGGAGTTCTAACCATGTGGAATCCACCCCATCAAATGGAAAACTAGAGGCATTTAAAGATCTCACCATCTGA 3303 0.4096 MGVSLPPREANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSHREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSSVTVCGRIGSCPLISFIDYLAIPVPGAHRSDYEDISVGKKIVLAIQTLGVVFGAVGTSPLYTFSVMFRKAPINGNEDILGALSLVLYTLILIPLLKYVLVVLWANDDGEGGTFALYPLICRHAKVSLLPNQLPLDTRISSFRLKVPSPELERSLKFKERLKTSLTLKKIILILVLTGTSMVIANGVVTSAIVQKYGTSKVGLAIGPALFLCALKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGFFQKALEELQKKELKIVDKLAYKEQEVSLLVKLGRLEEGEKLYRTLLSMNPDNYRYYEGLQKCVGLDSENGHFSPDEIEQLDALYKTLEQQYKWSSAVKRIPLDFLQGDKFREAADSYIRPLLTKGVPSLFSDLSSLYNQPRKADVLEQIILELESSLKSTGQYPGRMEKEPPSTLMWTLFFLAQHYDRLGQYEIALSKIDEAICHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRPYVEMLKFQDQLHSHAYFHKAAVGAIRCYIKLHDFPSKSTAEEDDDMSKLLPSQKKKMRQKQRKAEARAKKEAEIKNEESSAGGVSKSGKRHAKPVDPDPRGEKLMQVEDPLLEATKYLNLLQKNSPDSLETHILSFELYMRKQKILLAFQAVKQLLRLDTEHPDSHRCLITFFNKVGSMNVPVTDSEKLVWSVLEAERQTISQLHGKSLFETNNSFLEKHEDSLMHRAAFGEMLYVLDPNRRPEAVKLIEGSTNDLVPRNGVLGPIGEWKLKDCIAVHKLLGTVLVDEDAALRWKERCAKFFPYSTYFEGSRSSAFNQIGKSTENGSSNHVESTPSNGKLEAFKDLTI 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00201 1100 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Vimu4g00201 1100 SMART tpr_5 43 76 IPR019734 GO:0005515
Vimu4g00201 1100 SMART tpr_5 590 623 IPR019734 GO:0005515
Vimu4g00201 1100 SMART tpr_5 77 110 IPR019734 GO:0005515
Vimu4g00201 1100 Pfam N-terminal acetyltransferase A, auxiliary subunit 397 906 IPR021183 -
Vimu4g00201 1100 SUPERFAMILY TPR-like 401 637 IPR011990 GO:0005515
Vimu4g00201 1100 SUPERFAMILY TPR-like 591 917 IPR011990 GO:0005515
Vimu4g00201 1100 MobiDBLite consensus disorder prediction 789 854 - -
Vimu4g00201 1100 MobiDBLite consensus disorder prediction 789 804 - -
Vimu4g00201 1100 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 715 935 - -
Vimu4g00201 1100 Gene3D - 715 934 - -
Vimu4g00201 1100 Gene3D - 350 713 - -
Vimu4g00201 1100 Gene3D - 2 168 - -
Vimu4g00201 1100 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 356 1036 - -
Vimu4g00201 1100 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Vimu4g00201 1100 Pfam K+ potassium transporter 204 350 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vimu4g00201 1100 Pfam TPR repeat 84 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00201 Vimu-Chr4 1390165 1413070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00201 167 391 Inorganic Solute Cotransporters AT5G09400 58.555 4.35e-67 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00201 K20792 - gmx:100776968 1251.5