Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00200 ATGGAGAAAGAAGATCTTGGCCTTGAAATCACCGAGCTCCGGTTGGGCCTTCCCGGCGCCGGTGGGGAGAACAACACCGACAAGGACAAGAATAAGAACAAGAAGAGGGTCTTCTCCGACATTGAAGGTGAAAACAGCTCCTCTGAAGAAGATGGCAAAAAAGAAACCAAGAATCAAGTGGTGGGGTGGCCTCCGGTTTGCTCCTACCGCAAGAAGAACACCGTCAATGAACCTAAACTCTACGTTAAAGTCAGCATGGACGGTGCTCCTTTCTTGCGTAAAATCGATTTAGCCATGCACAAGGGATACTCCGACTTGGCCTTTGCCTTGGACAAGTTCTTCGGTTGCTACGGAATCTGCGAAGCGTTGAAGGATGCGGAAAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGCGACTGGATGCTGGTTGGAGATGTTCCTTGGGAGATGTTTAGGGAGTCATGCAAGAGATTGAGGATTATGAAGAGATCAGATGCAAAGGGGTTCGATCTGCAGCCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGAAAAAATGA 567 0.4815 MEKEDLGLEITELRLGLPGAGGENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKETKNQVVGWPPVCSYRKKNTVNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALDKFFGCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVKK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00200 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Vimu4g00200 188 MobiDBLite consensus disorder prediction 25 57 - -
Vimu4g00200 188 Gene3D - 73 176 - -
Vimu4g00200 188 FunFam Auxin-responsive protein 74 175 - -
Vimu4g00200 188 MobiDBLite consensus disorder prediction 16 57 - -
Vimu4g00200 188 Pfam AUX/IAA family 41 171 IPR033389 -
Vimu4g00200 188 SUPERFAMILY CAD & PB1 domains 73 164 - -
Vimu4g00200 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 168 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00200 Vimu-Chr4 1376403 1378477 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00200 39 187 B3 DNA Binding Superfamily AT4G23980 28.859 1.27e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vimu4g00200 AUX_IAA 3e-43 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00200 K14484 - gmx:100305535 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00200 4 1376403 1378477 Vimu4g00200 4 1376403 1378477 ECH
Vimu11g02817 11 48244682 48247655 Vimu4g00200 4 1376403 1378477 PCT