LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00199	ATGTGGTCACAATCACAAAGCAGCATCCACTCGTCGGAATCTGACGCCGTTGATTGTAACTTGAAGGAGACGGAGCTCACGCTGGGACTTCCCGGTACCAAACGTTCCTTCTCCGACACCGTTGATCTTCATCTTGCCACATCGCTAAATAAATCCAAACTCCCAACACCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAGAATGCTATGAAGAGTTGCAAGTTCGTGAAGGTGGCTGTGGACGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAATTGTACGACAGCAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTAGAAATGGGATTGAATACATGCCCACCTACGAGGACAAAGATGGTGATTGGATGTTGGTCGGAGATGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGGCTTATGATTAGCTCAGAGGCTATTGGACTAGGTCCGAGATCTAGTTCAAAATGTTCGGGTTCCACCTAG	516	0.4748	MWSQSQSSIHSSESDAVDCNLKETELTLGLPGTKRSFSDTVDLHLATSLNKSKLPTPKEQVVGWPPVRASRKNAMKSCKFVKVAVDGAPYLRKVDLELYDSNHLMNERKLMESRNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAIGLGPRSSSKCSGST	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00199	171	Gene3D	-	72	165	-	-
	Vimu4g00199	171	Pfam	AUX/IAA family	103	162	IPR033389	-
	Vimu4g00199	171	Pfam	AUX/IAA family	23	76	IPR033389	-
	Vimu4g00199	171	SUPERFAMILY	CAD & PB1 domains	70	152	-	-
	Vimu4g00199	171	PANTHER	AUXIN-RESPONSIVE PROTEIN IAA17	19	158	IPR003311	GO:0005634\|GO:0006355
	Vimu4g00199	171	ProSiteProfiles	PB1 domain profile.	78	155	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00199	Vimu-Chr4	1366446	1367726	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g00199	66	161	B3 DNA Binding Superfamily	AT4G23980	32.692	2.82e-06	44.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	AUX/IAA	Vimu4g00199		AUX_IAA	4.8e-28	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00199	K14484		-	gmx:100500488	258.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu4g00199	4	1366446	1367726	Vimu4g00199	4	1366446	1367726	ECH