Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00196 ATGAGTGGGAGGAGTTGGTTGAGTGGCATGCATGAGCACCTTAAATTGGCGAGAGAATACGCGGCGGAAGGACTCTACGACACCTCTATCATCTTCTTCGACGGAGCCGTTGCCCGAATCGGCGACCACCTCAACTCCGTCGACGACCCTTTACTGAGGGCGAAATGGATGAACGTGAAGAAAGCGCTGTGCGATGAAACCCAAGTGGTGAAACAACTAGACGCCGAGAGAAGGGCGTTTAAGGAAACTCGACCACGATCACGATCACGATCATATTCCTCCTCCTCCTTTGTTTTTCAACCGTCGGATGAGTATCCCATTCCCACTACCACTCCTCGCGCTTCCTCCGTCGACGAACATGACCCCGACGTCTGGAGACCGCCAAGTCGAGATGCCAGAAGGCCCGCCATACCCACTGCTCGAAAGGACGGAGCTTGGAGCCGAGGCTCTACCAGGCCTGCTCCTGGTGCCGTAAAGCCCAGCAGGGTTAGCTCTGGGCGCCGACCACCGACGGATGGAAAGAACGGCGGCGGCGGTGCTTCTGGAAAGGGTAGCAGGACAGGTGATGGTTCACGTTCAGTTAATGAAGATGGGAAGAAGTCAAAAAAGTATGAGTATGAAGGTCCTGATCCTGAGCTGGCGGAAATGTTGGAAAGGGATGTGTTAGAAAGGTCTCCTGGTGTGAGATGGGACGATGTTGCAGGCCTCACTCAAGCAAAAAGCCTTCTAGAAGAAGCCCTTGTACTTCCCTTGTGGATTCCTGAATATTTCCAGGGAATAAGGAGACCTTGGAAAGGAGTTCTCATGTTTGGGCCTCCAGGAACTGGGAAAACTCTTCTTGCTAAAGCAGTTGCCACTGAATGTGGTACCACTTTCTTTAACGTTTCTTCTGCTACTTTGGCATCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCACATGCACCCAGCACCATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGGGGGGCTTCTGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAACAATAGTTCAAAAAATGAAGATGGAACCCGTAAGATAGTAATGGTTTTGGCAGCCACTAACTTTCCATGGGACATAGATGAGGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTGGAGAGTCGTAAAGAGCTGATCCGTATCAATCTGAGGACTGTAGAGGCAAGTTAG 1275 0.5012 MSGRSWLSGMHEHLKLAREYAAEGLYDTSIIFFDGAVARIGDHLNSVDDPLLRAKWMNVKKALCDETQVVKQLDAERRAFKETRPRSRSRSYSSSSFVFQPSDEYPIPTTTPRASSVDEHDPDVWRPPSRDARRPAIPTARKDGAWSRGSTRPAPGAVKPSRVSSGRRPPTDGKNGGGGASGKGSRTGDGSRSVNEDGKKSKKYEYEGPDPELAEMLERDVLERSPGVRWDDVAGLTQAKSLLEEALVLPLWIPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAHAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSKNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIRINLRTVEAS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00196 424 Gene3D - 406 422 - -
Vimu4g00196 424 MobiDBLite consensus disorder prediction 89 115 - -
Vimu4g00196 424 PANTHER AAA DOMAIN-CONTAINING 86 421 - -
Vimu4g00196 424 SMART AAA_5 263 406 IPR003593 GO:0016887
Vimu4g00196 424 FunFam Katanin p60 ATPase-containing subunit A1 5 81 - -
Vimu4g00196 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 419 IPR027417 -
Vimu4g00196 424 MobiDBLite consensus disorder prediction 190 212 - -
Vimu4g00196 424 CDD Kp60-NTD 8 76 - -
Vimu4g00196 424 FunFam Katanin p60 ATPase-containing subunit A1 225 415 - -
Vimu4g00196 424 Pfam ATPase family associated with various cellular activities (AAA) 267 404 IPR003959 GO:0005524|GO:0016887
Vimu4g00196 424 MobiDBLite consensus disorder prediction 116 138 - -
Vimu4g00196 424 Gene3D - 226 405 IPR027417 -
Vimu4g00196 424 Gene3D - 6 81 - -
Vimu4g00196 424 MobiDBLite consensus disorder prediction 80 212 - -
Vimu4g00196 424 ProSitePatterns AAA-protein family signature. 376 395 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00196 Vimu-Chr4 1349364 1351143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00196 172 424 Calmodulin-binding Proteins AT3G56690 40.310 5.33e-42 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00196 K07767 - csav:115705274 607.446