Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00186 ATGGAAAGCTTAAAAACACCTTTTAAGGGTGTTAAAAAGGACCTTCGAGGAAGAGCGGTGTTCTATGAAGATGATTGGAGAACTGGTCTCTACTCAGGAATTGGAATATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCAGTCATTGCCTTTGGCGAGCAGCTAAGTAGAGATACAGATGGAAGCTTGAGCACTGTAGAAACACTGGCTTCTACAGCTATTTGTGGAATCATACACTCAATTCTGGGTGGCCAGCCTCTCTTAATCGTAGGAGTTGCTGAACCCACTATCATTATGTACACCTATTTGTACAACTTTGCCAAAGATAAGGATTCCTTGGGACGAGAACTCTTTTTAGCTTGGGCAGGATGGGTTTGTGTATGGACTGCTCTCTTGCTATTTCTTCTAGCAATATTCAATGCTGGAAATATCATCAACAGATTTACAAGGATCGCGGGTGAGCTTTTTGGCATGTTGATCACTGTCTTGTTCATTCAAGAGGCTATAAAGGGAATTGTAAGTGAGTTTAATGTTCCTAAAGAGGGAGATCCAACATCGGAAAAGTACCATTTTGATTGGCTGTATGCAAATGGATTGATGGGCATTATATTCACCTTTGGCCTTCTCTATACGTCTTTAAAGAGTAGAAGAGCAAGGTCATGGTTATATGGCACAGGGTGGTTTAGAAGTTTCATTGCAGACTATGGGGTACCTTTCATGGTGGTGGTGTGGACAGCACTATCATTCATAGTACCAAGTAAAGTGCCTTCTGGAGTTCCCAGAAGGCTCACCTCTCCTCTTGTTTGGGAGTCTACATCTTTACATCACTGGACAGATATGGGGAAGGTTTCTCCGTCATATATTTTTGCTGCTTTTATTCCTGCCATAATGATAGCGGGGCTTTACTTCTTTGACCATAGTGTTGCTTCCCAGATGGCACAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCATACCACTATGACCTATTGTTGCTAGGACTAACGACTTTGCTTTGTGGATTAATTGGCTTACCACCTTCAAATGGAGTTCTTCCTCAATCTCCTATGCATACCAAGAGCCTGGCTGTTCTCAAGAAACAGATGATCAGAAGAAAGATGGTTAAAAGTGCCAAGGAAAGCATAAGTCTTAAAGCTAGCAATTCTGAAATTTATGGAAAGATGCAAGCAGTGTTTATAGAAATGGATGACTGTCCAGATAATCATTTAGTGGACAAAGAACTAGAGGATTTGAAAGAGGTTGTCTTAAACGGTGAAGACAAAGGACATGACAAAAAGAGTAACTTTGATCCTGAAAAACACATTGATGCATATTTGCCTGTGAGAGTAAAGGAGCAGAGAGTGAGCAATCTCTTACAATCAATCTTTGTTGGAGCATCAGTCTTTGCCATGCCTGCCATAAAAAAGATACCAACTTCAGTTCTGTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTTTGGGAAAGGATCTTACTCCTTTTTGTAACACCTAGTAGGTGGCACAAGTTGTTGGAGGGGGATCATGCTTCCTATGTCGAGTCAGTACCTTACAGATACATAGTATTGTTCACACTCTTCCAATGTGTGTATTTCTTGGTTTGCTTTGGAGTGACATGGATTCCCATAGCTGGAATCCTGTTCCCCTTGCCTTTCTTTTTCCTGATCACATTGAGGCAGCATATACTCCCCAAGCTGTTCAAGTCTCACCATCTTAGGGAACTGGATGCAGCTGAATACGAAGAAATAATTGCTGCTCCAGGACTAACATTCAATAGGTCTTTCAGGGAGGGAGAATCACCCAGAGTTGGATCAGTGGAAATAGTTAATGCTGAAATATTAGATGAGTTAACTACAAATAGAGGGGAGTTGAAGGTTAGAAATGTCAGCTTCAGTGAGGAAAGAAATCGCCAGGATTTACAGGTGTACCCTGCTGAAACCGGATCTCCAGACAAATTGTTAGGGACGAAAGGTGATGAATTGAATCCTACATTATAA 2043 0.4131 MESLKTPFKGVKKDLRGRAVFYEDDWRTGLYSGIGILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQPLLIVGVAEPTIIMYTYLYNFAKDKDSLGRELFLAWAGWVCVWTALLLFLLAIFNAGNIINRFTRIAGELFGMLITVLFIQEAIKGIVSEFNVPKEGDPTSEKYHFDWLYANGLMGIIFTFGLLYTSLKSRRARSWLYGTGWFRSFIADYGVPFMVVVWTALSFIVPSKVPSGVPRRLTSPLVWESTSLHHWTDMGKVSPSYIFAAFIPAIMIAGLYFFDHSVASQMAQQKEFNLKKPSAYHYDLLLLGLTTLLCGLIGLPPSNGVLPQSPMHTKSLAVLKKQMIRRKMVKSAKESISLKASNSEIYGKMQAVFIEMDDCPDNHLVDKELEDLKEVVLNGEDKGHDKKSNFDPEKHIDAYLPVRVKEQRVSNLLQSIFVGASVFAMPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWHKLLEGDHASYVESVPYRYIVLFTLFQCVYFLVCFGVTWIPIAGILFPLPFFFLITLRQHILPKLFKSHHLRELDAAEYEEIIAAPGLTFNRSFREGESPRVGSVEIVNAEILDELTTNRGELKVRNVSFSEERNRQDLQVYPAETGSPDKLLGTKGDELNPTL 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00186 680 MobiDBLite consensus disorder prediction 660 680 - -
Vimu4g00186 680 PANTHER ANION EXCHANGE PROTEIN 5 598 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vimu4g00186 680 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016020
Vimu4g00186 680 Pfam HCO3- transporter family 200 372 IPR011531 GO:0006820|GO:0016020
Vimu4g00186 680 Pfam HCO3- transporter family 451 541 IPR011531 GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00186 Vimu-Chr4 1219939 1223682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00186 1 661 Antiporters AT1G74810 68.012 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00186 K24194 - gmx:100811184 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02922 10 40296388 40300239 Vimu4g00186 4 1219939 1223682 ECH
Vimu4g00186 4 1219939 1223682 Vimu4g00186 4 1219939 1223682 ECH