Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00179 ATGTTGAAGACTGAGTTGTGTAGGAGATTCAGGAGAGGCGCGTGCGTTCATGGAACCAAATGCGATTACGCGCACAGCGTTGCGGAGCTCCGACGCCAACCCAAACTATGCAGATTGTTCCTTCAAAACAAACACTGCCCCTACGGACGCACCTGTCGCTACCTGCATTCAGTCACACCAACGCCGCCACCGCCACCACCACAACCATCAACTTTTCAAATTCCAAATCTATCATCTCAACCAGTAGTAGGGCAACTTGATCGCTCCTCTTCTGCGGAATACAAGAGAATGAGAACTTGTGCAGAAAGTTGGACAATGCAAACTGCTGCTACTGCAAATGCCTCAACTAGCACTCTGGCAGCAGGTAGCCCTTCCCCTAAGAATGAACCGTATGCTGTGAAGTTCGTATTCAAGAAAAACGAACTAAAAAAGATCGATCGCATTTATGCTGATTGGATTTCAGATTTACCTCTCTGA 477 0.4759 MLKTELCRRFRRGACVHGTKCDYAHSVAELRRQPKLCRLFLQNKHCPYGRTCRYLHSVTPTPPPPPPQPSTFQIPNLSSQPVVGQLDRSSSAEYKRMRTCAESWTMQTAATANASTSTLAAGSPSPKNEPYAVKFVFKKNELKKIDRIYADWISDLPL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00179 158 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 57 IPR000571 GO:0046872
Vimu4g00179 158 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 26 IPR000571 GO:0046872
Vimu4g00179 158 ProSiteProfiles Zinc finger C3H1-type profile. 31 59 IPR000571 GO:0046872
Vimu4g00179 158 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Vimu4g00179 158 PANTHER CCCH ZINC FINGER/TIS11-RELATED 2 94 IPR045877 GO:0003729
Vimu4g00179 158 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Vimu4g00179 158 SMART c3hfinal6 1 27 IPR000571 GO:0046872
Vimu4g00179 158 SUPERFAMILY CCCH zinc finger 2 32 IPR036855 GO:0046872
Vimu4g00179 158 Gene3D - 34 59 - -
Vimu4g00179 158 Gene3D - 1 33 - -
Vimu4g00179 158 SUPERFAMILY CCCH zinc finger 33 59 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00179 1 59 C3H Transcription Factor Family AT1G68200 40.299 1.20e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g00179 zf-CCCH 2.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00179 - - vun:114185879 240.736