Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00176 ATGACCTTTCCAGAAAAAATAGTCCTGGATTTTATACCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATATTTTTTCTGTGGAAGAAAGAGCATAGTAGTCACATTGTTGGATACCATAAATGGTTCTATAGCTGTTCTGAGTTGATGGTGTGGATAAATATTATTTTCTTCACAAAGCGTGGCGGCAGTCACCACATTGTCTTCAATCGTGTTTTATGTTTCTGGTGGATTCCTAAAGCAATATTGGCAGTTTTGTATTTGATGACAAAGATTTCATCATTTAAGGTTTCAATTTGCATCACGGAAAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCATAGCCATCAATGTGATAAGGATAAAGAGACCATCTTACAAAAACAGTTTTTTGGAGGATCCACTTCTTTCGAATGGTGTGGACCTTGAGGAAGGTGGTTATCAAGACCTTGAAAGTGGTGGAAACTTTTGGGATTTGATGACTTTCAACTTCATAACTCCAGTAATGAATCATGGTGTGGTAAAACAATTAGATTCTGATGACCTATTGCCACTACCGACTGATATGGGTCCTTCTTCCTGTCATGGTGTGATTTTGTCCTGCTGGCAAGCTCAACTGAGTAACAATGGCTCTAATTCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATACCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGCGGGGCCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAACAAGGTTCGGTGAATTGGGATGGGTATTTACTTGCATTATCCTTGGGGCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTTCGAGTGAACTTAGCAGAGCGTTCAAAATTTACAAATGGAGAAATTCAGACATTTATGTCAGTGGATGCTGATCGAACTGTCAACTTATGTAATAGTTTCCATGATATGTGGAGTCTACCTCTACAGATTGGAGTGGCTCTCTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATAGCACAATTGATTGCAAGTGCTACTGAGCAGATGATGAAGGAGAAAGATGAAAGAATTCGTAAGACAGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGATACAAGATCTTTGGAAGTGAAACACTTAGCGACTCGAAAGTACTTGGATGCGTGGTGTGTTTTCTTTTGGGCTACAACACCAACACTCTTCTCTCTTTTCACTTTTGGACTCTATGCACTAATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCATTGTTCAACACCCTTATTTCACCACTAAATTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCCAGACGGTTGAGTAGGTTTCTCACTTGTCCTGAAGATAAATTTAAAGTGGGAAACAAAAGTTCTTGTCCACCATCATTCCTAAGTGAACAGCCTGATTCTGTACAAGGTTTGGGTGTATTTATCCAAGATGCATGTTGTACTTGGTCAAGTAGTGAGGAACAAGTATTAAATATGGTGTTGAATCGTGTGAATTTAAGTGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTATATTCAATCCTTGGAGAAATGCAGCTTGTTCGTGGCTCTATTTATTCCAATGAGTCCATAGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGTGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACTGATACACTGAAGGCATGTGCATTAGATGTTGATGTCTCATTGATGATTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTTAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCATTATATCATGACTCAGCTGTTGTTATGCTTGATGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCGATGTATCTTATACAATGCCATTCTAGGTCCCCTTATGCAGAGAAAAACCCGATTGCTCTGTACCCATAACATTCAGGCAATATCTTCTGCTGACAAGATTGTTGTAATGGACAAGGGACACATAAAGTGGATAGGAAATTCATATGACTTTCCAATTAATTCATGTACACAATTCTCTCCGCTTAATGAAATTGATTCAGCTTTACAGAATCATGGACAATCTTGCAGCCCAAATCTTTCTTCCAAATCCGAGGAGCACTCTCTTCTTGGTACAAGTATTGTGCGTGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAAATTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATGACAGTCATTATATGCTTATCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATACAACAACAGAAAGCAGTCAAACAAGATATTCTGTGTCTTTCTATCTGGCTATACTGTGTCTCTTTTGTATTATTAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGGGGATTACAAACTGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATGAATGCACCTGTCCAATTCTTTGATCAGACCCCTGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACCATTGATGATTCACTTCCATTCATTCTGAACATTCTCCTAGCGAATTTCGTTGGCTTGTTGGGTATTACAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTATATCTACAGCAGACTTCAGTGGCTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGACGGCTGGACAGTGTTTCCCGCTCTCCAATATACTCAACATTCACTGAAACACTTGATGGATCATCAACTATTAGAGCGTTTAAATCTGAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGCAATTAGGTGCATTTATCATCTCTTTCATAGCTGTGATGGCTGTTGTTGGATCTCGTGGCAGTCTGCCCATCAACTTTGGTACCCCAGGATTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCTTATTGGGGAGTTTTTTGTCAAGCTTCACTGAAACGGAAAAGGAAATGGTTTCAATTGAAAGAACTCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGAGGCCTATACTTGAATCAAGATTGGCCAAATCAAGGATTTATCGAATTCCAGTGTGTTACTTTGAAATATTTACCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCTGGAGGGACACAAGTTGGAATAATTGGAAGAACAGGCGCTGGAAAGTCCAGTGTGTTAAATGCTCTTTTCCGTCTTACTCCAATATGTACAGGCTCTATCTCAATTGATGGCGTGGATATTAAAAATATTTCCGTCAGGGAACTACGTACACATTTGGCCATTGTTCCTCAGAGTCCATTTTTGTTCGAAGGATCATTAAGGGATAACCTAGATCCTTTCAAAATGAATGATGACTTAAAAATTTGGAATGCATTGGAAAAGTGCCATGTGAAAGAGGAAGTAGAAGCAGCTGGAGGGCTGGACCTTCTTGTAAAGGAAGGAGGGATGTCATTTTCAGTTGGCCAACGGCAACTTCTTTGCCTCGCCCGTGCACTTTTGAAATCTTCCAAGGTTCTCTGTTTGGATGAATGCACAGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAACCACCATATCCGGTGAATGCAAAGGAATGACAGTTCTCACAATTGCTCACCGGATTTCAACTGTTTTAAATATGGACAACATTCTGATTCTTGACCATGGGAAACTGGCTGAACAGGGTAACCCACAGGTTCTTCTGAAAGATGACACCTCGATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAG 4188 0.3964 MTFPEKIVLDFIPAVGACLSIVDIFFLWKKEHSSHIVGYHKWFYSCSELMVWINIIFFTKRGGSHHIVFNRVLCFWWIPKAILAVLYLMTKISSFKVSICITESLVVLLNISFGIAINVIRIKRPSYKNSFLEDPLLSNGVDLEEGGYQDLESGGNFWDLMTFNFITPVMNHGVVKQLDSDDLLPLPTDMGPSSCHGVILSCWQAQLSNNGSNSSLFRALCSAYGWPYLRLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNWDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAQLIASATEQMMKEKDERIRKTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLTCPEDKFKVGNKSSCPPSFLSEQPDSVQGLGVFIQDACCTWSSSEEQVLNMVLNRVNLSVSQGSFVAVIGEVGSGKSSLLYSILGEMQLVRGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDVSLMIGGDMAYIGEKGVNLSGGQRARLALARALYHDSAVVMLDDVLSAVDVQVARCILYNAILGPLMQRKTRLLCTHNIQAISSADKIVVMDKGHIKWIGNSYDFPINSCTQFSPLNEIDSALQNHGQSCSPNLSSKSEEHSLLGTSIVRALEGAEEIVEVELRKEGKVEIGVYKNYAVFTGWFMTVIICLSAILMQASRNGNDLWLSYWVDTTTESSQTRYSVSFYLAILCLFCIINSFFTLVRAFSFAFGGLQTATKVHNKLLNKLMNAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFILNILLANFVGLLGITIILCYVQVFFLLLLLPFWYIYSRLQWLQFFYRSTSRELRRLDSVSRSPIYSTFTETLDGSSTIRAFKSEKTSYTEIVASLWLSLRLQQLGAFIISFIAVMAVVGSRGSLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSIERTLQYMDIPQEEQTGGLYLNQDWPNQGFIEFQCVTLKYLPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSISIDGVDIKNISVRELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNALEKCHVKEEVEAAGGLDLLVKEGGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQTTISGECKGMTVLTIAHRISTVLNMDNILILDHGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00176 1395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 233 508 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g00176 1395 CDD ABCC_MRP_domain2 1156 1375 - -
Vimu4g00176 1395 FunFam ABC transporter C family member 13 537 789 - -
Vimu4g00176 1395 FunFam ABC transporter C family member 5 812 1141 - -
Vimu4g00176 1395 FunFam ATP-binding cassette (ABC) transporter, putative 1144 1392 - -
Vimu4g00176 1395 SMART AAA_5 582 756 IPR003593 GO:0016887
Vimu4g00176 1395 SMART AAA_5 1184 1362 IPR003593 GO:0016887
Vimu4g00176 1395 Pfam ABC transporter transmembrane region 232 496 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g00176 1395 Pfam ABC transporter transmembrane region 848 1055 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g00176 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1152 1383 IPR027417 -
Vimu4g00176 1395 FunFam Multidrug resistance-associated protein ABC domain protein 207 525 - -
Vimu4g00176 1395 CDD ABCC_MRP_domain1 554 755 - -
Vimu4g00176 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 765 IPR027417 -
Vimu4g00176 1395 ProSitePatterns ABC transporters family signature. 680 694 IPR017871 GO:0005524|GO:0016887
Vimu4g00176 1395 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1158 1391 IPR003439 GO:0005524
Vimu4g00176 1395 Pfam ABC transporter 573 705 IPR003439 GO:0005524
Vimu4g00176 1395 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 552 779 IPR003439 GO:0005524
Vimu4g00176 1395 Pfam ABC transporter 1176 1322 IPR003439 GO:0005524
Vimu4g00176 1395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 848 1123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu4g00176 1395 CDD ABC_6TM_MRP7_D2_like 847 1135 - -
Vimu4g00176 1395 SUPERFAMILY ABC transporter transmembrane region 220 525 IPR036640 GO:0005524|GO:0016020
Vimu4g00176 1395 CDD ABC_6TM_MRP7_D1_like 231 516 - -
Vimu4g00176 1395 SUPERFAMILY ABC transporter transmembrane region 844 1140 IPR036640 GO:0005524|GO:0016020
Vimu4g00176 1395 Gene3D - 549 782 IPR027417 -
Vimu4g00176 1395 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 155 1391 - -
Vimu4g00176 1395 Gene3D ABC transporter type 1, transmembrane domain 217 525 IPR036640 GO:0005524|GO:0016020
Vimu4g00176 1395 Gene3D - 1145 1392 IPR027417 -
Vimu4g00176 1395 Gene3D ABC transporter type 1, transmembrane domain 815 1142 IPR036640 GO:0005524|GO:0016020
Vimu4g00176 1395 ProSitePatterns ABC transporters family signature. 1294 1308 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00176 Vimu-Chr4 1138168 1153263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00176 572 762 Calmodulin-binding Proteins AT2G36910 28.019 1.12e-16 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00176 K05674 - gmx:100814181 2452.17