Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00168 ATGAGCGAGTTTAACCTGATAAATGTTGATAAGATCTTCATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGACGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGCTCTTTCCATCATATCAGCATTGTCTGATACTTTCACAAATTTGAATGCCACAAAATTATCGGCCAAAGATGGTAGTGGAGATTTCAAAACCATCAATGAAGCACTGAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCCAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGTGTCACCACTTATAAAACTGCCACAGTTGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGGTTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGAACCATCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGACCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAGGACCATTTTCATGGATACGTACATCGATGATTTGATTCAAGGTGAAGGATATTTGCCATGGCAAGCATTAGAGGGACCTACTGGTATGAATACTTGCTTTTATGCGGAGTATCACAACACTGGCCCTGGTTCAGATAAATCCAAACGTGTGAATTGGAATGGGATTTTGAATCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGGGTTCCTTGCTTCCATGGCGTGCCCCCACACTACAGGCACAAGAACACCACATTACCCTGGTGA 1209 0.4202 MSEFNLINVDKIFMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNALSIISALSDTFTNLNATKLSAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGQKTRITGNKNYIDGVTTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKEEPSAIVIQGGSIVADPEFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLPWQALEGPTGMNTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFHGVPPHYRHKNTTLPW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00168 402 Pfam Pectinesterase 80 374 IPR000070 GO:0030599|GO:0042545
Vimu4g00168 402 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 68 IPR035513 -
Vimu4g00168 402 FunFam Pectinesterase 70 389 - -
Vimu4g00168 402 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 13 67 IPR035513 -
Vimu4g00168 402 SUPERFAMILY Pectin lyase-like 80 386 IPR011050 -
Vimu4g00168 402 Gene3D - 78 390 IPR012334 -
Vimu4g00168 402 CDD PMEI-like_3 15 67 - -
Vimu4g00168 402 Pfam Plant invertase/pectin methylesterase inhibitor 11 62 IPR006501 GO:0004857
Vimu4g00168 402 ProSitePatterns Pectinesterase signature 1. 101 120 IPR018040 -
Vimu4g00168 402 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vimu4g00168 402 PANTHER PECTINESTERASE 11 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00168 Vimu-Chr4 1099122 1100532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00168 4 384 Carbohydrate Esterase AT5G49180 49.409 5.01e-149 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00168 K01051 - gmx:100803527 671.774