Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00164 ATGGCTGACTTGGTAACCTGTTTCCCTCTTCCAAAATCTTATGATGACTGCTTGCAATTCTATATGTCTATGTGCGTACACTTGCAGATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCTAGAGTCCGTCACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATTGTATATGATTATATGCCGAATTTGAGCTTGCTCTCTCATCTTCATGGACAGCACTCAGCAGAATCCCTTCTTGATTGGAGCCGGCGGATGAACATCGCAATTGGGTCTGCTGAGGGAATTGCATATCTTCACCACCAGTCTACACCACACATCATCCACAGAGATATCAAGGCAAGCAATGTGTTGTTGGATTCAGATTTCCAGGCACGGGTTGCTGATTTTGGTTTTGCAAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTAGGGTACCTTGCACCCGAATATGCCATGCTAGGTAAAGCAAACGAGAGTTGTGATGTCTACAGTTTTGGAATTCTTCTTCTAGAACTTGCCAGTGGCAAAAAACCACTTGAAAAACTTAGTTCTACGGTAAAGAGATCGATAAATGATTGGGCACTGCCATTGGCTTGTGAAAAGAAGTTTAGTGAATTAGCAGATCCAAAGCTGGAGGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTTGTTTTAATTGCTCTATTGTGTGCTCAGAGTCAGCCAGAGAAGAGGCCCACCATACTTGAGGTGGTAGAACTACTGAAGGGAGAATCCAAAGATAAGTCAATTCAGCTGGAAAATAATGAAATCTTTAAAAGCCCTCCAGTTGTAGGACATACTGATGATGAGACATTTACAGCTGAAGGAAGTTCTGATTTCATCTCAGAAGAGAAAGAATCAAAACCTGAGTTGGAAGAGAAAACTAGGCCATGA 999 0.4244 MADLVTCFPLPKSYDDCLQFYMSMCVHLQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWSRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSTVKRSINDWALPLACEKKFSELADPKLEGNYVEEELKRVVLIALLCAQSQPEKRPTILEVVELLKGESKDKSIQLENNEIFKSPPVVGHTDDETFTAEGSSDFISEEKESKPELEEKTRP 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00164 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Vimu4g00164 332 MobiDBLite consensus disorder prediction 294 332 - -
Vimu4g00164 332 MobiDBLite consensus disorder prediction 314 332 - -
Vimu4g00164 332 PANTHER OS01G0253100 PROTEIN 29 283 - -
Vimu4g00164 332 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00164 332 Pfam Protein tyrosine and serine/threonine kinase 27 276 IPR001245 GO:0004672|GO:0006468
Vimu4g00164 332 Gene3D Transferase(Phosphotransferase) domain 1 82 294 - -
Vimu4g00164 332 Gene3D Phosphorylase Kinase; domain 1 19 81 - -
Vimu4g00164 332 FunFam PTI1-like tyrosine-protein kinase At3g15890 81 292 - -
Vimu4g00164 332 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00164 332 SUPERFAMILY Protein kinase-like (PK-like) 28 276 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00164 Vimu-Chr4 1053404 1054479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00164 30 289 Trihelix Transcription Factor Family AT1G70460 50.000 2.79e-82 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vimu4g00164 PK_Tyr_Ser-Thr 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00164 - - gmx:100788153 558.91