Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00156 ATGGGTATATTAAGACGGGGAACATTGTTTTTCTGTGTGTTCCTTTTGTTTAGTACCTGTCTGGCGAAAGATCAAAACATTCTTCAGATATATCCTGGCTTCAGTGCATCTCAGCCTGATTGGAGCGACCATAATGGTTTTTTCTTGATATCCAACAGCTCTGCTTTCGGTTTTGGATTCTTCACTACTCTCGATGTTTCGTCGTTCGTTTTAGTTGTCTTGCACTTGAGCAGCTACAAAGTGGTTTGGACTGCCAACAGAGGTTTATTGGTTGGGAAATCTGCTAAATTTGAGCTGGAGCGTAGTGGGAATGCATATTTGAAAGGTGATGATGGTGTGGTTTGGGCAACAAATACAACAGGGCATAAAGTGAGAGCCATGGAGTTGCTAGACTCAGGGAATTTGGTGTTGGTTGGGGATAATGGGACAGCCATTTGGCAAAGTTTTAGCCATCCCACTGACACTCTTTTGCCAGGGCAAGAATTTGTGGAGGGAATGACGCTCAAAAGCTTCCACAACAGCTTGAACATGATCTATTATCTTAGTTATAAGGCCGGTGATTTGCTTCTCTACGCAGGATTTGAAACTCCACAAGTGTACTGGTCCCTATCAGAAGAGGTTCATACAAGCTACAAAAATACCACCACCAAGGTTCACTCAGCTTCTTTGGTGTCCAATTCATGGAGATTTTATGACACAAATCGAGCTTTGCTGTGGAAAGTTAATTTCTCTGAGCACTCAGATCAGAACTCATTGTGGGCTGCTACCTTGGATCCAACCGGTGCTATCACTTTTTATGACCTTAACAAAGGGAAATCTCCCACCCCTGAGGCATTTAAGGTACCACAAGGCCCATGTAGCACTCCTCAGCCTTGTGATCCTTACTATGTTTGCTTAAATGACAACTGGTGCATCTGCCCAAAACTTCTCAGAACTCGTTTTAACTGCAAACCTCCCAACATCTCCAGCTGTTCCAGTACTTCAACAGAACTTGTGTCTGTCGGTGAAGATCTTGATTATTTTGCTCTCAAGTACACTACACCGGTCTCAAAATCAACCCTGAATTCTTGCAAAGAGTCTTGCGTAGGAAACTGCTCTTGCCGTGTGCTTTTCTTTGAAAACAGAACCGGTAGATGCTTTCATTTTGATGACACTGGGAGTTTCCAACGCAGTAAGTGGGGCACCAGTGGGTATGTTTCATTCATGAAGGTCTCCATTGGTAGTGACGATGGACATAGCAACAAAAATGGAAGGAATGACACGGTCCTAGTTGTAATCATAGTAGTTCTCACAGTTCTGGTTATTGTTGGTCTTGTCACAGTATTCTTGTACTACTACAAGAGGAAGAAGAATGTTGCTAGGTATCCTGAAGACACCTTTGAGGAAGACGATGATTTCTTGGACAGTATCTCTGGGATGCCTGCGCGTTTTACTTTTGCTGCTCTTTGTAGAGCAACTAAGGACTTCTCCACAAAAATTGGGGAAGGAGGTTTTGGCTCAGTGTATTTAGGTGAGCTTGAAGATGGCACCCAGTTGGCTGTGAAAAAATTGGAAGGTGTTGGACAAGGCGCCAAAGAGTTCAAAGCAGAAGTGTCCATAATTGGAAGTATTCATCACGTTCATTTGGTGAAGCTCAAAGGGTTCTGTGCCGAAGGTCCTCATCGCCTTCTTGTCTATGAATACATGGCAAGGGGTTCTCTGGACAAATGGATCTTCAAGAACAGTGAGAACAGTTTCTTGCTGAACTGGGAGACAAGGTACAACATTGCAATAGGCACGGCTAAGGGGTTGGCCTATCTCCACGAGGAGTGTGAAGTGAGGATTATCCACTGTGACATCAAGCCACAAAATGTTCTTCTTGATGACAATTTCACAGCAAAGGTTTCAGATTTTGGATTGGCAAAGCTAATGAGCCGCGAGCAGAGCCATGTGTTCACAACTCTGAGGGGCACAAGAGGGTATTTAGCACCAGAATGGATTACCAACTACGCAATTTCGGAGAAGAGTGATGTGTTCAGCTATGGCATGCTCTTGCTTGAGATAATAGGAGGGAGGAAGAACTATGATCAATGGGAAGGGGCAGAGAAGGCACATTTTCCTTCTTATGTGTTCAGAATGATGGATGAAGGGAAACTTAAAGAAGTTCTTGATCCAAAGATTGATATTGATGAGAAGGACGAAAGGGTTGAGACTGCTCTAAAAGTTGCTCTTTGGTGCATACAAGATGACGTGAGTTTGAGGCCTTCCATGTCAAAGGTATCTCAGATGCTTGAAGGCTTGTGTGTTGTACCTGATCCCCCTTCATTATCTCAAGCTGGTACTTATTCAGCTTTCATGAAATTGAGTAGTGGAGAAGCTACTTCATCGGGACAGGCCAGTTTTTTCAGTAATGTACCCATGTCATGTGTTCAGTTATCAGGACCAAGATGA 2430 0.4366 MGILRRGTLFFCVFLLFSTCLAKDQNILQIYPGFSASQPDWSDHNGFFLISNSSAFGFGFFTTLDVSSFVLVVLHLSSYKVVWTANRGLLVGKSAKFELERSGNAYLKGDDGVVWATNTTGHKVRAMELLDSGNLVLVGDNGTAIWQSFSHPTDTLLPGQEFVEGMTLKSFHNSLNMIYYLSYKAGDLLLYAGFETPQVYWSLSEEVHTSYKNTTTKVHSASLVSNSWRFYDTNRALLWKVNFSEHSDQNSLWAATLDPTGAITFYDLNKGKSPTPEAFKVPQGPCSTPQPCDPYYVCLNDNWCICPKLLRTRFNCKPPNISSCSSTSTELVSVGEDLDYFALKYTTPVSKSTLNSCKESCVGNCSCRVLFFENRTGRCFHFDDTGSFQRSKWGTSGYVSFMKVSIGSDDGHSNKNGRNDTVLVVIIVVLTVLVIVGLVTVFLYYYKRKKNVARYPEDTFEEDDDFLDSISGMPARFTFAALCRATKDFSTKIGEGGFGSVYLGELEDGTQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMARGSLDKWIFKNSENSFLLNWETRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGAEKAHFPSYVFRMMDEGKLKEVLDPKIDIDEKDERVETALKVALWCIQDDVSLRPSMSKVSQMLEGLCVVPDPPSLSQAGTYSAFMKLSSGEATSSGQASFFSNVPMSCVQLSGPR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00156 809 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 768 - -
Vimu4g00156 809 SMART blect_4 40 152 IPR001480 -
Vimu4g00156 809 Gene3D - 39 151 IPR036426 -
Vimu4g00156 809 FunFam serine/threonine-protein kinase PBS1-like 456 561 - -
Vimu4g00156 809 CDD B_lectin 45 152 IPR001480 -
Vimu4g00156 809 Gene3D Phosphorylase Kinase; domain 1 456 561 - -
Vimu4g00156 809 CDD STKc_IRAK 493 760 - -
Vimu4g00156 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vimu4g00156 809 Pfam Protein kinase domain 490 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00156 809 ProSiteProfiles Protein kinase domain profile. 487 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00156 809 Pfam D-mannose binding lectin 81 162 IPR001480 -
Vimu4g00156 809 PIRSF SRK 4 806 IPR024171 GO:0004674
Vimu4g00156 809 SMART serkin_6 487 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00156 809 ProSiteProfiles PAN/Apple domain profile. 324 405 IPR003609 -
Vimu4g00156 809 ProSiteProfiles Bulb-type lectin domain profile. 34 150 IPR001480 -
Vimu4g00156 809 FunFam S-receptor-like kinase 5 562 766 - -
Vimu4g00156 809 Gene3D Transferase(Phosphotransferase) domain 1 562 762 - -
Vimu4g00156 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 203 IPR036426 -
Vimu4g00156 809 SUPERFAMILY Protein kinase-like (PK-like) 470 758 IPR011009 -
Vimu4g00156 809 ProSitePatterns Protein kinases ATP-binding region signature. 493 516 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00156 Vimu-Chr4 1004256 1006685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00156 428 767 Receptor kinase-like Gene Family AT5G20050 44.290 3.11e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu4g00156 Pkinase 7.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00156 - - gmx:100786024 1392.1