Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00151 GTTTCACGTGCTTTCATTCAACTTTTGCTGCCATCTAATTCTACTTCTTCCAATTTGATGGCGCAAATTCTGCTCCATGGCACTCTCCATGCGACAATCTACGAAGTCGACAACCTCAAAATTGGTGGCGGCAATTTCTTAACCAAGATCGTACATAACATCGAAGAGACCGTTGGTTTTGGAAAAGGTGTGACTAAATTATATGCAACCATTGATCTAGAGAAGGCACGAGTGGGAAGGACCAGAATTCTAGAAAAGGAGCACAAGAATCCAAGATGGTACGAGTCCTTTCACATTTACTGTGCCCATATGGCATCAAACATCATATTCACAGTGAAAGATGATAATCCTATTGGGGCAACCTTAATCGGAAGAGCATATGTTCCTGTTGAGGAGATCTTGCATGGTGAAGAAATAGATAAATGGGTTGAAATATTGGATGAGGATAGAAATCCAATACATGGAAATTCCAAGATCCACGTGAAGCTGCAGTATTTTGATATTTCGAAAGACCGCAACTGGGCTCTTGGCATTAGAAGTCCCAAATTTCCTGGTGTTCCTTATACTTTCTTTTCACAAAGACGAGGATGTAAGGTTTCTCTGTACCAAGATGCTCATGTATCAGACAACTTTGTCCCTAGAATACCACTCAGTGGAGGCCAGACTTACCAACCTCATAGATGTTGGGAGGATGTTTTTGATGCAATCACCAAAGCACAACACTTGATATACATTACAGGTTGGTCTGTATATACTGAGATTTCGTTGGTAAGGGATTCTAGGAGGCCAAAGCCTGGAGGAGACATAACACTCGGTGAGCTTCTGAAGAAAAAAGCAAGTGAAGGTGTCAGGGTTTTGATGCTGGTCTGGGATGATAGAACTTCAGTTCCCTTGTTAAAAAAAGATGGTTTGATGGCCACTCACGATCAAGAAACAGAGGAGTTCTTCAGGGGAACTGAAGTGCATTGTGTTTTATGCCCTCGCAATCCCGATGACGGTGGAAGCATTGTTCAGGATTTGGAAATTTCAACCATGTTTACTCATCACCAGAAAATCGTAGTCGTGGACAGTGAATTGCCGAGTGGAGAATCTGAGAAGCGAAGGATTGTTAGTTTTGTGGGGGGAATTGATCTCTGTGATGGGAGATATGACACTCCGTTCCATTCTCTTTTCAGAACCCTGGACACAGCACATCATGATGATTTTCATCAGCCTAACTTCGGTGGTGCAGCAATAACAAAAGGTGGTCCGAGAGAACCATGGCACGACATCCATTCTCGACTCGAAGGGCCTATTGCTTGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAACAAGGTGGAAAAGACTTGCTAGTTCCTCTGAGAGACCTTGAAGATGTGATTATTCCTCCATCCCCAGTAACTTACCCTGATGATCGAGAGACATGGAACGTTCAGTTATTTAGATCAATCGATGGTGGTGCTGCTTTTGGGTTCCCGGAGACTCCAGAAGAAGCTGCAAGAGTCGGGCTTGTGAGTGGGAAGGATAATATAATAGACCGTAGTATACAAGATGCTTATGTTAATGCCATTAGACGTGCAAAAAATTTCATCTATATTGAGAATCAGTATTTCCTCGGAAGCTGTTACGGTTGGAGTGCCGATGGCATTAAGCCTGAAGACATTGGCGCTTTGCATCTTATCCCGAAGGAGCTTTCACTTAAGATAGTGAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATGTTGTTGTCCCAATGTGGCCAGAGGGTGTTCCAGAAAGTGCATCAGTTCAGGCAATATTGGATTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTCGTACAGGCGCTCCAGGCCAAAGGAATAGAGGAAAATCCTCGGAACTATCTGACATTCTTCTGCCTTGGTAATCGGGAGGTGAAGAAAGAAGGAGAGTACGAGCCTCCACAAAGACCAGATCCTGATACAGATTACATCAGAGCCCAAGAGGCCCGGCGCTTCATGATATATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATTGTTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCAAGAGACTCTGAGATTGCAATGGGTGGTTATCAACCTTATCATTTGTTTACAAGTGAGCCAGCAAGGGGTCAGATTCATGGTTTTCGAATGGCATTGTGGTATGAACACCTTGGCATGCTTGACGAGTCCTTCCTCTACCCTGAAAGAACAGAATGTATAAGGAAGGTGAACCAGATTTCTGACAAGTATTGGGATCTGTATTCAAGTGAGTCTCTTGAGCATGATCTTCCTGGCCACTTACTCCGTTACCCTATTGGGGTTTCCAGCGAAGGAACTGTCACTGAGCTTCCAGGATTTGAATTCTTTCCTGACACCAAGGCTCGTGTTCTTGGCAACAAAGTTGACTACTTGCCACCCATTCTTACTACTTAG 2481 0.4365 VSRAFIQLLLPSNSTSSNLMAQILLHGTLHATIYEVDNLKIGGGNFLTKIVHNIEETVGFGKGVTKLYATIDLEKARVGRTRILEKEHKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEILHGEEIDKWVEILDEDRNPIHGNSKIHVKLQYFDISKDRNWALGIRSPKFPGVPYTFFSQRRGCKVSLYQDAHVSDNFVPRIPLSGGQTYQPHRCWEDVFDAITKAQHLIYITGWSVYTEISLVRDSRRPKPGGDITLGELLKKKASEGVRVLMLVWDDRTSVPLLKKDGLMATHDQETEEFFRGTEVHCVLCPRNPDDGGSIVQDLEISTMFTHHQKIVVVDSELPSGESEKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFGGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPVTYPDDRETWNVQLFRSIDGGAAFGFPETPEEAARVGLVSGKDNIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSCYGWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYVVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVVQALQAKGIEENPRNYLTFFCLGNREVKKEGEYEPPQRPDPDTDYIRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLFTSEPARGQIHGFRMALWYEHLGMLDESFLYPERTECIRKVNQISDKYWDLYSSESLEHDLPGHLLRYPIGVSSEGTVTELPGFEFFPDTKARVLGNKVDYLPPILTT 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00151 826 ProSiteProfiles C2 domain profile. 10 143 IPR000008 -
Vimu4g00151 826 CDD PLDc_pPLDalpha_2 510 718 - -
Vimu4g00151 826 Gene3D Endonuclease Chain A 218 457 - -
Vimu4g00151 826 FunFam Phospholipase D delta 219 462 - -
Vimu4g00151 826 Pfam Phospholipase D C terminal 744 816 IPR024632 -
Vimu4g00151 826 Pfam C2 domain 27 145 IPR000008 -
Vimu4g00151 826 CDD C2_plant_PLD 21 166 - -
Vimu4g00151 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 672 699 IPR001736 GO:0003824
Vimu4g00151 826 FunFam Phospholipase D 485 718 - -
Vimu4g00151 826 Gene3D C2 domain 25 175 IPR035892 -
Vimu4g00151 826 PANTHER PHOSPHOLIPASE D 23 815 IPR015679 -
Vimu4g00151 826 Pfam Phospholipase D Active site motif 673 699 IPR001736 GO:0003824
Vimu4g00151 826 Pfam Phospholipase D Active site motif 344 382 IPR001736 GO:0003824
Vimu4g00151 826 Gene3D Endonuclease Chain A 491 714 - -
Vimu4g00151 826 SMART pld_4 672 699 IPR001736 GO:0003824
Vimu4g00151 826 SMART pld_4 344 382 IPR001736 GO:0003824
Vimu4g00151 826 SUPERFAMILY Phospholipase D/nuclease 170 461 - -
Vimu4g00151 826 PIRSF PLD_plant 14 826 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu4g00151 826 SMART C2_3c 28 142 IPR000008 -
Vimu4g00151 826 SUPERFAMILY Phospholipase D/nuclease 465 756 - -
Vimu4g00151 826 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 344 382 IPR001736 GO:0003824
Vimu4g00151 826 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 168 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00151 Vimu-Chr4 977003 981126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00151 20 826 Phospholipase D Gene Family (Wang group) AT3G15730 82.222 0.0 1426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00151 K01115 - gmx:100784434 1561.2