Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00144 ATGGCATCAAATATCATATTCACAGTGAAAGATGATAACCCAATTGGTGCAACCTTAATCGGAAGAGCATATGTGCCCGTTGAGGAGATTTTGGATGGGAAAGAAATAGATAGATGGGTTGAAATATTGGATGAACAAAGAAAGCCAATACATTTACATTCCAATATCCATGTGAAGCTGCAGTACTTTGATGTTTCAAAAGACCTCAACTGGGGCCAAGGTATCAGAAGTCCTAAATTCCCTGGAGTTCCTTACACTTACTTCCCACAAAGACAAGGATGTAGGGTTTTCTGGTACCAAGATGCTCATGTTCCA 315 0.4 MASNIIFTVKDDNPIGATLIGRAYVPVEEILDGKEIDRWVEILDEQRKPIHLHSNIHVKLQYFDVSKDLNWGQGIRSPKFPGVPYTYFPQRQGCRVFWYQDAHVP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00144 105 PANTHER PHOSPHOLIPASE D 2 105 IPR015679 -
Vimu4g00144 105 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 65 IPR035892 -
Vimu4g00144 105 Gene3D C2 domain 1 71 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00144 Vimu-Chr4 923146 923468 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00144 1 105 Phospholipase D Gene Family (Wang group) AT3G15730 69.524 8.34e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00144 K01115 - jre:109013124 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g02783 11 48018629 48022128 Vimu4g00144 4 923146 923468 ECH
Vimu10g02958 10 40560920 40564362 Vimu4g00144 4 923146 923468 ECH
Vimu4g00144 4 923146 923468 Vimu4g00144 4 923146 923468 ECH
Vimu4g00144 4 923146 923468 Vimu11g02783 11 48018629 48022128 PCT