Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00142 ATGTTCACTGCCAAATATGGAGGTGGTCCGCCAAATCCTTTGTTCATGAAGCTTCCAAATGGAACTCAATGGAAAGTGATTTGGGAAAATGACAACGGTGAGATTTGGCTAAGAGAGGGATGGAAGGAATTTGTGGAACATTATTCCTTGGACCACGAACATTTTGTTTTCTTTGAATACGAAGGAACAGATCATATCAATGTAAAGATATGTAAGCAAAATGGAGTAAAAATAGACTATCCCTGTGGCAGTGGTGATGGAAGTTACAACCTTGGTGAAAATGAGGAGGAACCCATCATAATTTCGGATGAAGAAGAGAGCCCTGAACAAATAGGAAGTAAGGATTCATTGTTTGTTTGCTTTGTTATCTTTATATTTTTTCATCTCACAAAATTTCAAGATTCTTCACAAAACATGTCGTTGACTGGTTTAGTACGTGAATTGCATTCCAAAGGTGAGAGGTCTGTTCAAAGAACTTCATCTTTGAACCAACCAAATCAAACTAGGGCAAGAGAAGTAGCAAGCAATTTCATTTCATGCAATCCCTTTTTCACTGTTGTCATCACACCTTCTCAGGCAATGGAATATCGGCTGGTGGGTAAATCTTAA 609 0.3826 MFTAKYGGGPPNPLFMKLPNGTQWKVIWENDNGEIWLREGWKEFVEHYSLDHEHFVFFEYEGTDHINVKICKQNGVKIDYPCGSGDGSYNLGENEEEPIIISDEEESPEQIGSKDSLFVCFVIFIFFHLTKFQDSSQNMSLTGLVRELHSKGERSVQRTSSLNQPNQTRAREVASNFISCNPFFTVVITPSQAMEYRLVGKS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00142 202 Gene3D - 1 75 IPR015300 -
Vimu4g00142 202 CDD B3_DNA 2 72 IPR003340 GO:0003677
Vimu4g00142 202 Pfam B3 DNA binding domain 2 73 IPR003340 GO:0003677
Vimu4g00142 202 ProSiteProfiles B3 DNA-binding domain profile. 1 74 IPR003340 GO:0003677
Vimu4g00142 202 PANTHER B3 DOMAIN-CONTAINING 2 144 - -
Vimu4g00142 202 SUPERFAMILY DNA-binding pseudobarrel domain 2 81 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00142 Vimu-Chr4 910252 910860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00142 4 106 B3 DNA Binding Superfamily AT1G49475 29.126 1.08e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu4g00142 B3 5.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00142 - - vum:124838216 243.817