Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00132 ATGAAAGCGCTCAAGCTTCACCTTGTGAAGTTACTTGTGTTCGTTGTTGTTACCATTGCTGCAAGAAAGGTTGCTGCTGAGTTCATTGGAACCTTTATTATCATGTTCGCTGCCACTGCTGCAGCCATTGTCAACCACGGCTCTGAGACCCTTAAGACCCTTAGTTGTGCTGCCACAGCGGGTCTCACGGTTATGGTTGTCATATTTGCCACCGGACATATTTCCGGAGCCCATATCAACCCAGCTGTTACCTTTTCTTTTGCTGTATTGAAGCACTTCCCATGGAAACATGTGCCTATTTATATTGGTGCACAAATCTTGGCATCGATTTTTTCCGCATTTGCTCTAAAAGGGGTTTATCATCCTTTTATGAATGGTGGAGTTACAGTTCCTTCCGGAGGATATGGCCAATCTTTCGCTTTAGAATTCATTATTACATTCAATCTAATGTTTGTTGTCACTGCAGTTGCCACCGACCCCAAAGCCGTGGGAAAACTCGCAGGAATTGCAGTGGGAGGCACTGTGATGCTCAATATACTAATAGCAGGGCCAATATCAGGGGGTTCAATGAACCCAGTGAGAACACTAGGTCCTGCCATCGTTACAAATAATTATAAAGCTATATGGATTTATATGATAGCTCCCGTACTCGGAGCTTTAGCCGGTGCATGTACCTATACTGTAGTGAAACTGCCTAAAGAAGGTGAAAGCAAAGGCTTCAATTAG 726 0.4408 MKALKLHLVKLLVFVVVTIAARKVAAEFIGTFIIMFAATAAAIVNHGSETLKTLSCAATAGLTVMVVIFATGHISGAHINPAVTFSFAVLKHFPWKHVPIYIGAQILASIFSAFALKGVYHPFMNGGVTVPSGGYGQSFALEFIITFNLMFVVTAVATDPKAVGKLAGIAVGGTVMLNILIAGPISGGSMNPVRTLGPAIVTNNYKAIWIYMIAPVLGALAGACTYTVVKLPKEGESKGFN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00132 241 Gene3D Glycerol uptake facilitator protein. 15 238 IPR023271 -
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 172 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 PANTHER AQUAPORIN NIP2-1 18 233 IPR034294 -
Vimu4g00132 241 SUPERFAMILY Aquaporin-like 19 233 IPR023271 -
Vimu4g00132 241 Pfam Major intrinsic protein 21 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00132 241 ProSitePatterns MIP family signature. 78 86 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00132 Vimu-Chr4 868371 870083 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00132 22 237 Major Intrinsic Protein MIP AT1G80760 70.507 3.43e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00132 K09874 - gmx:100815637 340.117