Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00124 CATATTCTTCCAAAGACTGAGACACAGAATAGGGATCTCATTTCTCTCCGCTTTTCGTCAGTAAGGTTCTTGTTTCACACAGAGCTATACATACTAGAAATGTCGGAGAGAAATGTTGATAAGCGAAAGAAGATCATCATTGGTGTTTCAACCTTGTTCTTGGCAGCTGTAGTTGGGGCTATCGTAATTGGTATCAACCTCAATGAGAGTGGTTCAAATGGAAATAGTTCAAAAGGATATGTTGCTTCCTCTGTAAAAGCCGTCCAAACCCTTTGTAGTCCCACGAATTACAAGAAAGAATGTGAAGAAAATCTCATGACAGGTGTTGGTGACCGCACAACAACAGATCCGTTTGAACTTATCAAATTTGCTTTCAATATCACCATGAAAGAAATTACTGATAAATTCAAAGAAATGAATATCTTGCATGACATTGAAAAGGAGCCTAGAGCGAAGATGGCACTTGAAACATGCAAACAACTCATGAATCTTTCAGTTTCAGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTAATGAGTGTTGATAAAATCTTCATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGATCAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAAGATTTATTAACGACAAGCATGCATATGACTAGCAATGGTCTTTCCATCATATCAGCATTATCTGATACTTTCACAAATTTGAATGCCACAAAATTATTGGGACGTCGCCTCCTCCAAGATTCTGAGCCACCCTATGGAGGACTAAATGAAACTCTGATATTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGCAGTGGAGATTTCAAAACCATCAATGAAGCACTAAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGCGTCACCACTTATAAAACTGCCACAGTTGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGATTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGAACCATCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGACCCTGAGTATTATCCAGTAAGATTTGATAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAAGACCATTTTCATGGATACGTACATCGAGGACTTGATTCAAGGTGAAGGATATATGCCATGGCAAACATTAGAGGGACCTACTGGAATGGATACTTGCTTTTATGCGGAGTATCACAACACTGGCCCTGGTTCAGACAAATCCAAACGTGTGAATTGGAATGGGATTTTAAACCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGACTACTGGGGTTCCTTGCTTCCATGGCGTACCCCCACACTACAGGCACAAGAACACCACGTTAACCTGGTGA 1821 0.408 HILPKTETQNRDLISLRFSSVRFLFHTELYILEMSERNVDKRKKIIIGVSTLFLAAVVGAIVIGINLNESGSNGNSSKGYVASSVKAVQTLCSPTNYKKECEENLMTGVGDRTTTDPFELIKFAFNITMKEITDKFKEMNILHDIEKEPRAKMALETCKQLMNLSVSELERSFIGMSEFNLMSVDKIFMNLKVWLSGALTYQDTCLDQFENTTSDAGKKMQDLLTTSMHMTSNGLSIISALSDTFTNLNATKLLGRRLLQDSEPPYGGLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGVTTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVIRKPMKNQQCIVTAQGRKEKEEPSAIVIQGGSIVADPEYYPVRFDNKAYLARPWKTYSKTIFMDTYIEDLIQGEGYMPWQTLEGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRTTGVPCFHGVPPHYRHKNTTLTW 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00124 606 Gene3D Invertase/pectin methylesterase inhibitor family protein 83 242 IPR035513 -
Vimu4g00124 606 Pfam Pectinesterase 280 578 IPR000070 GO:0030599|GO:0042545
Vimu4g00124 606 NCBIfam pectinesterase inhibitor domain 81 241 IPR006501 GO:0004857
Vimu4g00124 606 ProSitePatterns Pectinesterase signature 1. 305 324 IPR018040 -
Vimu4g00124 606 Gene3D - 275 593 IPR012334 -
Vimu4g00124 606 SMART PMEI_2 83 237 IPR006501 GO:0004857
Vimu4g00124 606 CDD PMEI-like_3 90 242 - -
Vimu4g00124 606 SUPERFAMILY Pectin lyase-like 278 590 IPR011050 -
Vimu4g00124 606 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 87 242 IPR035513 -
Vimu4g00124 606 Pfam Plant invertase/pectin methylesterase inhibitor 87 237 IPR006501 GO:0004857
Vimu4g00124 606 FunFam Pectinesterase 275 593 - -
Vimu4g00124 606 PANTHER PECTINESTERASE 52 583 - -
Vimu4g00124 606 ProSitePatterns Pectinesterase signature 2. 424 433 IPR033131 -
Vimu4g00124 606 FunFam Pectinesterase 84 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00124 Vimu-Chr4 812393 815067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00124 41 593 Carbohydrate Esterase AT3G05610 48.307 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00124 K01051 - gmx:100803527 867.455