Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00123 CCCTCTCGCACTAGCCTAGGGCTGGGGATTCGCCTCACATGCGCCGCCGCTTCCCTCCGACAGCCACCGCCACTGTTGAAGCGTGCTGCTAACGCCGTCAAGAAGATGAAGATTCATGGTGGGATCAAGGGTTCTCCCATTTCGATGAAGCAGGCAGCCGCCGTTCATTCCTCTCCCCCTCTGTCTCCATTCTTTGATTGGATATTGACAATGAAAACTGAGCTATACATACTAGAAATGTCGGAGAGAAATGTTGATAAGCGAAAGAAGATCATCATTGGTGTTTCAACCTTGTTCTTGGCAGCTGTAGTTGGGGCTATCGTAATTGGTATCAACCTCAATGAGAGTGGTTCAAATGGAAATAGTTCAAAAGGATATGTTGCTTCCTCTGTAAAAGCCGTCCAAACCCTTTGTAGTCCCACGAATTACAAGAAAGAATGTGAAGAAAATCTCATGACAGGTGTTGGTGACCGCACAACAACAGATCCGTTTGAACTTATCAAATTTGCTTTCAATATCACCATGAAAGAAATTACTGATAAATTCAAAGAAATGAATATCTTGCATGACATTGAAAAGGAGCCTAGAGCGAAGATGGCACTTGAAACATGCAAACAACTCATGAATCTTTCAGTTTCAGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTAATGAGTGTTGATAAAATCTTCATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGATCAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAAGATTTATTAACGACAAGCATGCATATGACTAGCAATGGTCTTTCCATCATATCAGCATTATCTGATACTTTCACAAATTTGAATGCCACAAAATTATTGGGACGTCGCCTCCTCCAAGATTCTGAGCCACCCTATGGAGGACTAAATGAAACTCTGATATTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGCAGTGGAGATTTCAAAACCATCAATGAAGCACTAAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCAAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGCGTCACCACTTATAAAACTGCCACAGTTGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGATTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGAACCATCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGACCCTGAGTATTATCCAGTAAGATTTGATAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAAGACCATTTTCATGGATACGTACATCGAGGACTTGATTCAAGGTGAAGGATATATGCCATGGCAAACATTAGAGGGACCTACTGGAATGGATACTTGCTTTTATGCGGAGTATCACAACACTGGCCCTGGTTCAGACAAATCCAAACGTGTGAATTGGAATGGGATTTTAAACCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGGGTTCCTTGCTTCCATGGCGTGCCCCCACACTACAGGCACAAGAACACCACGTTAACCTGGTGA 1959 0.4252 PSRTSLGLGIRLTCAAASLRQPPPLLKRAANAVKKMKIHGGIKGSPISMKQAAAVHSSPPLSPFFDWILTMKTELYILEMSERNVDKRKKIIIGVSTLFLAAVVGAIVIGINLNESGSNGNSSKGYVASSVKAVQTLCSPTNYKKECEENLMTGVGDRTTTDPFELIKFAFNITMKEITDKFKEMNILHDIEKEPRAKMALETCKQLMNLSVSELERSFIGMSEFNLMSVDKIFMNLKVWLSGALTYQDTCLDQFENTTSDAGKKMQDLLTTSMHMTSNGLSIISALSDTFTNLNATKLLGRRLLQDSEPPYGGLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGVTTYKTATVAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVIRKPMKNQQCIVTAQGRKEKEEPSAIVIQGGSIVADPEYYPVRFDNKAYLARPWKTYSKTIFMDTYIEDLIQGEGYMPWQTLEGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFHGVPPHYRHKNTTLTW 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00123 652 ProSitePatterns Pectinesterase signature 1. 351 370 IPR018040 -
Vimu4g00123 652 PANTHER PECTINESTERASE 98 629 - -
Vimu4g00123 652 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 133 288 IPR035513 -
Vimu4g00123 652 CDD PMEI-like_3 136 288 - -
Vimu4g00123 652 NCBIfam pectinesterase inhibitor domain 127 287 IPR006501 GO:0004857
Vimu4g00123 652 Pfam Plant invertase/pectin methylesterase inhibitor 133 283 IPR006501 GO:0004857
Vimu4g00123 652 SMART PMEI_2 129 283 IPR006501 GO:0004857
Vimu4g00123 652 Gene3D Invertase/pectin methylesterase inhibitor family protein 129 288 IPR035513 -
Vimu4g00123 652 FunFam Pectinesterase 130 288 - -
Vimu4g00123 652 Gene3D - 321 639 IPR012334 -
Vimu4g00123 652 Pfam Pectinesterase 326 624 IPR000070 GO:0030599|GO:0042545
Vimu4g00123 652 FunFam Pectinesterase 321 639 - -
Vimu4g00123 652 ProSitePatterns Pectinesterase signature 2. 470 479 IPR033131 -
Vimu4g00123 652 SUPERFAMILY Pectin lyase-like 324 636 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00123 Vimu-Chr4 772337 776536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00123 87 639 Carbohydrate Esterase AT3G05610 48.307 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00123 K01051 - gmx:100803527 867.455