Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00121 ATGATCCATAATCATAGATATGTGGCTATCAAGGCAGCAGTTCTAGTCAGAGTTGGCAAAACCATAGAGTTTAAGAGAGTTCCCCTTCTAGCTGACCATGGCAGCTCAGCCTTGACTAGTGTTGGGGTAGTGCAGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAAACCCACACCCTCTGTGTCAGATGCGGCCGTCGCAGCTTTCACCTCCAGAAGATTCGCTGTGCTGCGTGTGCATTCCCAGCAGCACGCACTAGAAAATATAACTGGAGCGTCAAGGCCATTAGGAGAAAGACCACTGGAACTGGAAGAATGAGGTACCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAACAGCTACCGCTGCCTAA 420 0.519 MIHNHRYVAIKAAVLVRVGKTIEFKRVPLLADHGSSALTSVGVVQGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKIRCAACAFPAARTRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGTATAA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00121 139 Gene3D - 46 131 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vimu4g00121 139 SUPERFAMILY Zn-binding ribosomal proteins 46 99 IPR011332 GO:0006412
Vimu4g00121 139 Pfam Ribosomal protein L37e 47 97 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu4g00121 139 Hamap 50S ribosomal protein L37e [rpl37e]. 46 97 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu4g00121 139 ProSitePatterns Ribosomal protein L37e signature. 48 67 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vimu4g00121 139 FunFam Ribosomal protein L37 45 132 - -
Vimu4g00121 139 PANTHER 60S RIBOSOMAL PROTEIN L37 46 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00121 Vimu-Chr4 763224 765442 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00121 47 139 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 83.871 6.72e-55 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00121 K02922 - gmx:100306503 189.504