Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00117 ATGGAAGAAATCATAGGACTTGGTTCTAAATTACAGACTAGTTCAAAGCAGATGACTACCAATTCACATGCATCAGAGATTTTGGTTGCTGGGATATGCACTGATATATGCGTGCTGGATTTTGTTTCTTCTGTCTTGTCCGCAAGAAACCGTGGTTTCCTCTCTCCTCTGGAAAATGTGATAGTGTCTTCCCAAGCTTGTGCTATTTATGATTTGCCATTACATGTTGCCAAAACTAACAAGGCTTTCGAGTTGATGCGTCACGTTGGCCTGTACATAGCCCGTGGAAGGTCTGGTTATCTACTAAAAATATCTTCAAAGAAGCATTCGATAGAAACTGGATATCAGTGCACCAAGGCCAACCCACCAAATCAAGGTGGTTCTGGAATCACCTACATTAAAGTTGAAGCTCAGCAGTCAGACACGCAAAGTGTAATAGTGGGAGAACTTGCAGGAATCGCGGTGGGAGCCACCGTGATGCTCAATATAATGATAGCAGGGCCAATATCAGGTGCCTCAATGAATCCAGTAAGAACACTAGGTCCTGCAATAGCCACAAAGAACTACAAAGCAATATGGGTTTATCTGGTAGCTCCCGTATTTGGAGCTTTAGCTGGTGCAGGTACCTATAGTGCAGTGAAGCTGTCCAAAGAAGATGATGCCAAAGAAAAAACTTCAATCAGCTTTAGAAAGTGA 696 0.4296 MEEIIGLGSKLQTSSKQMTTNSHASEILVAGICTDICVLDFVSSVLSARNRGFLSPLENVIVSSQACAIYDLPLHVAKTNKAFELMRHVGLYIARGRSGYLLKISSKKHSIETGYQCTKANPPNQGGSGITYIKVEAQQSDTQSVIVGELAGIAVGATVMLNIMIAGPISGASMNPVRTLGPAIATKNYKAIWVYLVAPVFGALAGAGTYSAVKLSKEDDAKEKTSISFRK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00117 231 Gene3D Glycerol uptake facilitator protein. 129 227 IPR023271 -
Vimu4g00117 231 Pfam Isochorismatase family 12 86 IPR000868 -
Vimu4g00117 231 SUPERFAMILY Isochorismatase-like hydrolases 24 92 IPR036380 -
Vimu4g00117 231 Gene3D - 6 97 IPR036380 -
Vimu4g00117 231 SUPERFAMILY Aquaporin-like 147 217 IPR023271 -
Vimu4g00117 231 Pfam Major intrinsic protein 137 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00117 231 PRINTS Major intrinsic protein family signature 156 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00117 231 PRINTS Major intrinsic protein family signature 193 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00117 231 PANTHER AQUAPORIN NIP2-1 142 219 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00117 Vimu-Chr4 715063 724583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00117 135 231 Major Intrinsic Protein MIP AT1G80760 68.041 4.31e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00117 K09874 - gmx:100815637 140.969