Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00116 ATGGGATTTGAGAACTCTGCTGGAGCCGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTACAATTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTGCGTCAGTATTACAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTTGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTCGTGGTTCGAAAGCCAATGAAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAAAAAGAAGAACCATCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGACCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCCAGGACCATTTTCATGGATACGTACATCGATGATTTGATTCAAGGCGAAGGATATTTGCCATGGCAAGCATTAGAGGGACCTACTGGTATGAATACTTGCTTTTATGCGGAGTATCACAACACTGGCCCTGGTTCAGATAAATCCAAACGTGTGAATTGGAATGGGATTTTGAACCTCAATTCGAAAGCTGCACGTTTGTTCTCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGAGTTCCTTGCTTCCCTGGCGTGCCCCCACACTACAGGCACAAGAACACCACATTACCCTGGTGA 705 0.4468 MGFENSAGAEKHQAVALRVQADKSVFYNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMKNQQCIVTAQGRKEKEEPSAIVIQGGSIVADPEFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLPWQALEGPTGMNTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFSPSKFFHGLDWVRATGVPCFPGVPPHYRHKNTTLPW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00116 234 Gene3D - 1 221 IPR012334 -
Vimu4g00116 234 PANTHER PECTINESTERASE 1 211 - -
Vimu4g00116 234 Pfam Pectinesterase 1 206 IPR000070 GO:0030599|GO:0042545
Vimu4g00116 234 SUPERFAMILY Pectin lyase-like 2 218 IPR011050 -
Vimu4g00116 234 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00116 Vimu-Chr4 698866 699570 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00116 1 216 Carbohydrate Esterase AT5G49180 56.019 2.57e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00116 K01051 - gmx:100803527 430.254