Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00115 ATGTCGGAGAGAAATGTTGATAGGAGAAAGAGGATCATCATTGGTGTTTCAACCTTGTTCTTGGCGGCTGTAGTTGGGGCTGTCGTATTTGGTATCAACCTCAATGAGAGTGGTTCAAATGGAAATGGTGATAATGTTAATAACAAAAAGGAACATGTTGCTGCTTCTGTAAAAGCCGTCCAAAGCCTTTGTAATCCCACGATTTACAAGGAAGAATGTGAGGAAAATCTCATGGCAGGTGTCGCAGACAGTACAACAACAAGTCCATTTGAACTTATCAAACTTGCTTTCAATATCACCATGGAAAAAATTACTGACAAATTCGAAGAAATGGATATCTTGCATGACATTGAGAAGGAGCCTAGAGCCAAGATGGCACTCGAAACATGCAAACAACTCATGAATCTTTCAGTTTCGGAGTTAGAAAGGTCATTTATTGGAATGAGCGAGTTTAACCTGATAAATGTTGATAAGATCTTCATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGACGAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGCTCTTTCCATCATATCAGCATTGTCTGATACTTTCACAAATTTGAATGCCACAAAATTATCGGGTAGAGACCTCCTTCAAGATTCTGAGTCACACTCATCGATTGATAATGGACGACTAAATGAAACTCTGATACTAAATCGCAAGCCTAATGTGACGGTAGCCAAAGATGGTAGTGGAGATTTCAAAACCATCAATGAAGCACTGAACAAAGTGCCCAAGAAAAATAAAACGCCATTTGTGATCTACATCAAGGAGGGCATCTACCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTTGTTTTCATTGGTGATGGTGGCCAAAAGACAAGAATAACAGGCAACAAAAACTACATAGATGGTGTCACCACTTATAAAACTGCCACAGTTGGTATGTCTTCTTTCATGTTTCTTTTCAATATCTTTGTTTGA 1053 0.3884 MSERNVDRRKRIIIGVSTLFLAAVVGAVVFGINLNESGSNGNGDNVNNKKEHVAASVKAVQSLCNPTIYKEECEENLMAGVADSTTTSPFELIKLAFNITMEKITDKFEEMDILHDIEKEPRAKMALETCKQLMNLSVSELERSFIGMSEFNLINVDKIFMNLKVWLSGALTYQDTCLDEFENTTSDAGKKMQDLLTTGMHMTSNALSIISALSDTFTNLNATKLSGRDLLQDSESHSSIDNGRLNETLILNRKPNVTVAKDGSGDFKTINEALNKVPKKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGQKTRITGNKNYIDGVTTYKTATVGMSSFMFLFNIFV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00115 350 SMART PMEI_2 55 209 IPR006501 GO:0004857
Vimu4g00115 350 NCBIfam pectinesterase inhibitor domain 54 213 IPR006501 GO:0004857
Vimu4g00115 350 Gene3D - 253 347 IPR012334 -
Vimu4g00115 350 FunFam Pectinesterase 56 214 - -
Vimu4g00115 350 SUPERFAMILY Pectin lyase-like 254 341 IPR011050 -
Vimu4g00115 350 PANTHER PECTINESTERASE 19 344 - -
Vimu4g00115 350 ProSitePatterns Pectinesterase signature 1. 281 300 IPR018040 -
Vimu4g00115 350 CDD PMEI-like_3 62 214 - -
Vimu4g00115 350 Pfam Pectinesterase 256 345 IPR000070 GO:0030599|GO:0042545
Vimu4g00115 350 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 214 IPR035513 -
Vimu4g00115 350 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857
Vimu4g00115 350 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 215 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00115 Vimu-Chr4 697719 698771 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00115 8 345 Carbohydrate Esterase AT3G05610 41.642 5.98e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00115 K01051 - gmx:100815272 423.705