Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00107 ATGAGAGGGATCTGGAGATTGTATAGGTATGAGACTATACAGTTGGACGAATCGAACATACACCGGAATGAGAGGGATCTGGAGACTCTTGCTTTGCAAGAAAGCAGCGAGTTCCCTCCGCCATGCTTCTTACATTCCATAGCACAAGGTTGGAAGAATCCCTATAAATATTGGCCATGTTCTTCTCTCCTCCCACCACAACGTCCTGCAGATTGTGCTGTTAGAGTATATCTTTCAACTTTGTTCTGTTTAGAGGGTGTTAAAGGGGACCTACGAGGAAGAGCGGTCTTCTATAAAGATGATTGGACAACCGGTCTCTATTCAGGAATTGGAATATTGGCTCCAACTATCTATATTTTCTTTGCTTCTGCTCTTCCAGTCATTGCCTTTGGCGAGCAGCTAAGTAGAGACACAGATGGAAGCTTGAGCACTGTAGAAACGCTGGCTTCTACAGCTATTTGTGGAATCATACACTCAATTTTGGGTGGCCAGCCTCTCTTAATCATAGGAGTTGCTGAGCCCACTATCATTATGTACACCTATTTGTACAACTTTGCCAAAGATAAGGATTCCTTGGGACGAGAACTCTTTTTAGCTTGGGCAGGATGGGTTTGTGTATGGTCTGGTCTCTTGCTGTTTTTTCTAGCAATATTCAATGCTGGAAATATCATCAATAGATTTACAAGGATCGCGGGTGAGCTTTTTGGCATGTTGATCACAGTCTTGTTCATTCAAGAGGCTATAAAGGGAATTGTAAGTGAGTTTAATGTTCCTAAAGAGGGAGACCCAACATTGGAAAAGTACCATTTTAATTGGCTGTATCCAAATGGATTGATGGGCATTATATTCACCTTTGGCCTTCTCTATACGTCTTTAAAGAGCAGAAGAGCAAGGTCATGGTTATATGGCACAGGGTGGTTTAGAAGTTTTGTTGCAGACTATGGGGTACCTTTCATGGTGGTGGTGTGGACATCACTATCATTCATAGTACCGAGTAAAGTGCCTTCTGGAGTTCCCAGAAGGCTCACCTCTCCTCTTGTTTGGGAGTCTACATCTTTATATCACTGGACAGATATGGGGAAGGTTCCTCCGTCATATATTTTTGCTGCTTTTATTCCCGCAATAATGATAGCGGGGCTCTACTTCTTTGACCATAGTGTTGCTTCCCAGATGGCACAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCATACCACTATGACATATTATTGCTAGGACTAACGACTTTGCTTTGTGGATTGATTGGCTTACCTCCTTCAAATGGAGTTCTTCCTCAATCTCCTATGCACACCAAGAGTCTGGCTGATCTCAAGAAACAGTCGATTCGGAAAAAGATGGTTAAAAGTGCGAAAGAAAGCATAAATCTTAAAGCTAGCAAATCTGAAATTTACGAAAAGATGCAAGCAGTGTTTATAGAAATCGATAAGTGTCCAAATAATCATTTAGCGGACAAAGAACTAGAGGATTTGAAAAAGGTTGTCTTAAACGGTGAAGATAAAGGACATGAAAAAAAGAGTAACTTTGATCCTGAAAAACACATTGATGCATATTTGCCTGTAAGAGTAAAGGAGCAGAGAGTGAGCAATCTCTTACAATCAATATTTGTTGGAGCATCAGTCTTTGGCATGCCTGCCATAAAAAAGATACCAACTTCAGTTCTGTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTTTGGGAAAGGATCTTACTCCTTTTTGTAACACCTAGTAGGTGGTACAAGTTGTTGGAGGGGGATCATGCTTCCTATGTCGAGTCAGTACCTTACAGATACATAGTATTGTTCACAGTCTTACAATGTGTGTATTTCTTGGTATGCTTGGGAGTGACATGGATTCCCATAGCTGGAATACTGTTCCCCTTGCCTTTCTTTTTCCTGATAACATTGAGGCAGCATATACTCCCCAAGCTGTTCAAGCCTCAACATCTTAGGGAACTGGATGCAGCTGAATACGAAGAAATAATTGTTGCTCCAGGAATAACTTTCAATAGGTCTTTCAGGGAGGTAGAATCACCCAGAGTTGGATCAGTGGAAATAGGTGATGCTGAAATATTGGATGAGTTAACTACAAATAGAGGGGAGTTGAAGGTTAGAAATGTCAGCTTCAGTGAGGAAAGAAATCGGCAGGATTTACAGATGTACCCTGATGAAACCGGATCTCCAGACCCAACTTCTTAG 2238 0.4142 MRGIWRLYRYETIQLDESNIHRNERDLETLALQESSEFPPPCFLHSIAQGWKNPYKYWPCSSLLPPQRPADCAVRVYLSTLFCLEGVKGDLRGRAVFYKDDWTTGLYSGIGILAPTIYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQPLLIIGVAEPTIIMYTYLYNFAKDKDSLGRELFLAWAGWVCVWSGLLLFFLAIFNAGNIINRFTRIAGELFGMLITVLFIQEAIKGIVSEFNVPKEGDPTLEKYHFNWLYPNGLMGIIFTFGLLYTSLKSRRARSWLYGTGWFRSFVADYGVPFMVVVWTSLSFIVPSKVPSGVPRRLTSPLVWESTSLYHWTDMGKVPPSYIFAAFIPAIMIAGLYFFDHSVASQMAQQKEFNLKKPSAYHYDILLLGLTTLLCGLIGLPPSNGVLPQSPMHTKSLADLKKQSIRKKMVKSAKESINLKASKSEIYEKMQAVFIEIDKCPNNHLADKELEDLKKVVLNGEDKGHEKKSNFDPEKHIDAYLPVRVKEQRVSNLLQSIFVGASVFGMPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWYKLLEGDHASYVESVPYRYIVLFTVLQCVYFLVCLGVTWIPIAGILFPLPFFFLITLRQHILPKLFKPQHLRELDAAEYEEIIVAPGITFNRSFREVESPRVGSVEIGDAEILDELTTNRGELKVRNVSFSEERNRQDLQMYPDETGSPDPTS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00107 745 Gene3D Helical hairpin bin 94 136 - -
Vimu4g00107 745 MobiDBLite consensus disorder prediction 724 745 - -
Vimu4g00107 745 Pfam HCO3- transporter family 85 256 IPR011531 GO:0006820|GO:0016020
Vimu4g00107 745 Pfam HCO3- transporter family 277 448 IPR011531 GO:0006820|GO:0016020
Vimu4g00107 745 Pfam HCO3- transporter family 527 618 IPR011531 GO:0006820|GO:0016020
Vimu4g00107 745 PANTHER ANION EXCHANGE PROTEIN 77 674 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00107 Vimu-Chr4 641981 647753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00107 85 737 Antiporters AT1G74810 67.171 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00107 K24194 - gmx:100811184 1142.1