Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00098 ATGTCTGACAGCAAAGAATGTTCTTCTTCATCCATTAGCTCCAGTTTAGAATTGCAGAACAAGTCCTTAAAATCTGCAGACAGTACTCATTTTGACGAATATGATTTTGTACTGGAACCTGAAATTGAAGACGAGGATGAAGATTTTGAAACGAGCATCGATAATTACTCCTTTATTATTGTAGGGTCCAATAAAGGCTCTGGGATACCTGGGGCTGTTTTCAATTTAACAACCACAGTTATTGGGGCAGGGATCATGGCCCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCGTGGAACTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCGTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAACCTGTGAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATTGATTCATTGAGCTTGACCTCGGCTGCCTCCGTGGCTCTTGCTGTTTTGTTTGTCGTTGTTGCTTTTACAGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGAACAACGGTCTCCTCAGAAAATGAACATGGTTGGCAGGTACACCACAATTTTGTGCATCCTAGTTTATGCTTCCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTATTGACTAATTTTGATAAGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCACTGCGCCAAACAGTGGACGCATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACCATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTATTTCATTGAGACTAAAACATCTGGGAGATCTAAGCTACGGGGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTCACTGTAAGCATCGTAGGAGTTGTTAGCAATGTCTATAGCCTTGAGAGTAAGTCTTAG 1440 0.416 MSDSKECSSSSISSSLELQNKSLKSADSTHFDEYDFVLEPEIEDEDEDFETSIDNYSFIIVGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELEQRSPQKMNMVGRYTTILCILVYASTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFEGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLISLRLKHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLESKS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00098 479 Pfam Transmembrane amino acid transporter protein 67 468 IPR013057 -
Vimu4g00098 479 PANTHER AMINO ACID TRANSPORTER 64 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00098 Vimu-Chr4 597028 598467 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00098 19 479 Amino Acid or Auxin Permease AAAP Family AT1G80510 72.138 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00098 - - var:108333183 796.193