Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00097 ATGACTCATTACAGTGTGGATGCAGATATGGAAAGCTTAAAAACACCTTTGGAGGGTGTTAAAAAGGACCTTCAAGGAAGAGCGGAGTTCTATAAAGATGATTGGACAACTGGTCTTTATGCAGGAACTGCAATATTGGCCCCAACTACCTATATTTTCTTTGCTTCTGCTCTTCCAGTCATTGCCTTTGGCGAGCAGCTAAGTAGAGACACAGATGGAAGCTTGAGCACTGTAGAAACGTTGGCTTCTACAGCTATTTGTGGAATCATACACTCAATTTTGGGTGGCCAGACTCTCTTAATTGTAGGAGTTGCTGAACCCACTGTCATTATGTACACCTATTTGTACAACTTTGCCAAAGATAAGGATTTATTGGGACGAGAACTATTTTTAGCTTGGGCAGGATGGGTTTGTGTATGGACTGCTCTCTTGTTGTTTCTTCTAGCAATATTCAATGCTGGAAATATCATCAATAGATTTACAAGGATGGCGGGTGAGCTTTTTGGCATGTTGATCACAGTCTTGTTCATTCAAGAGGCTATAAAGGGAATTGTAAGTGAGTTTAATGTTCCTAAAGAGGGAGACCCAACATTGGAAAAGTACCATTTTAATTGGCTGTATGCAAATGGATTGATGGGCATTATATTCACCTTTGTCCTTCTCTATACGTCTTTAAAGAGCAGAAGAGCAAGGTCATGGTTATATGGCACAGGGTGGTTTAGAAGTTTTGTTGCAGACTATGGGGTACCTTTCATGGTGGTGGTGTGGACAGCACTATCATTCACAGTACCGAGTAAAGTGCCTTCTGGAGTTCCAAGAAGGCTCACCTCTCCTCTTGTTTGGGAGTCTACATCTTTATACCACTGGACAGATATGGGGAAGGTTTCTTTGTCATATATTTTTGCTGCTTTTGTTCCCGCAATAATGATAGCGGGGCTCTACTTCTTTGACCATAGTGTTGCTTCCCAGATGGCACAACAGAAGGAATTCAATCTCAAGAAACCTTCTGCATACCACTATGACATATTATTGCTAGGACTAACGACTTTGCTTTGTGGATTGATTGGCTTACCTCCTTCAAATGGAGTTCTTCCTCAATCTCCTATGCACACCAAGAGTCTGGCTGATCTCAAGAAACAGTCGATTCGGAAAAAGATGGTTAAAAGTGCGAAAGAAAGCATAAATCTTAAAGCTAGCAAATCTGAAATTTACGAAAAGATGCAAGCAGTGTTTATAGAAATCGATAAGTGTCCAAATAATCATTTAGCGGACAAAGAACTAGAGGATTTGAAAAAGGTTGTCTTAAACGGTGAAGATAAAGGACATGAAAAAAAGAGTAACTTTGATCCTGAAAAACACATTGATGCATATTTGCCTGTAAGAGTAAAGGAGCAGAGAGTGAGCAATCTCTTACAATCAATATTTGTTGGAGCATCAGTCTTTGGCATGCCTGCCATAAAAAAGATACCAACTTCAGTTCTGTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTTTGGGAAAGGATCTTACTCCTTTTTGTAACACCTAGTAGGTGGTACAAGTTGTTGGAGGGGGATCATGCTTCCTATGTCGAGTCAGTACCTTACAGATACATAGTATTGTTCACAGTCTTACAATGTGTGTATTTCTTGGTATGCTTGGGAGTGACATGGATTCCCATAGCTGGAATACTGTTCCCCTTGCCTTTCTTTTTCCTGATAACATTGAGGCAGCATATACTCCCCAAGCTGTTCAAGCCTCAACATCTTAGGGAACTGGATGCAGCTGAATACGAAGAAATAATTGTTGCTCCAGGAATAACTTTCAATAGGTCTTTCAGGGAGGTAGAATCACCCAGAGTTGGATCAGTGGAAATAGGTGATGCTGAAATATTGGATGAGTTAACTACAAATAGAGGGGAGTTGAAGGTTAGAAATGTCAGCTTCAGTGAGGAAAGAAATCGGCAGGATTTACAGATGTACCCTGATGAAACCGGATCTCCAGACCCAACTTCTTAG 2037 0.4065 MTHYSVDADMESLKTPLEGVKKDLQGRAEFYKDDWTTGLYAGTAILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGIIHSILGGQTLLIVGVAEPTVIMYTYLYNFAKDKDLLGRELFLAWAGWVCVWTALLLFLLAIFNAGNIINRFTRMAGELFGMLITVLFIQEAIKGIVSEFNVPKEGDPTLEKYHFNWLYANGLMGIIFTFVLLYTSLKSRRARSWLYGTGWFRSFVADYGVPFMVVVWTALSFTVPSKVPSGVPRRLTSPLVWESTSLYHWTDMGKVSLSYIFAAFVPAIMIAGLYFFDHSVASQMAQQKEFNLKKPSAYHYDILLLGLTTLLCGLIGLPPSNGVLPQSPMHTKSLADLKKQSIRKKMVKSAKESINLKASKSEIYEKMQAVFIEIDKCPNNHLADKELEDLKKVVLNGEDKGHEKKSNFDPEKHIDAYLPVRVKEQRVSNLLQSIFVGASVFGMPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVTPSRWYKLLEGDHASYVESVPYRYIVLFTVLQCVYFLVCLGVTWIPIAGILFPLPFFFLITLRQHILPKLFKPQHLRELDAAEYEEIIVAPGITFNRSFREVESPRVGSVEIGDAEILDELTTNRGELKVRNVSFSEERNRQDLQMYPDETGSPDPTS 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00097 678 Pfam HCO3- transporter family 460 551 IPR011531 GO:0006820|GO:0016020
Vimu4g00097 678 Pfam HCO3- transporter family 17 189 IPR011531 GO:0006820|GO:0016020
Vimu4g00097 678 Pfam HCO3- transporter family 211 381 IPR011531 GO:0006820|GO:0016020
Vimu4g00097 678 PANTHER ANION EXCHANGE PROTEIN 13 607 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vimu4g00097 678 MobiDBLite consensus disorder prediction 657 678 - -
Vimu4g00097 678 Gene3D Helical hairpin bin 27 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00097 Vimu-Chr4 580245 583888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00097 7 670 Antiporters AT1G74810 66.518 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00097 K24194 - gmx:100811184 1156.74