Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00096 ATGTCTAACAGAAACGAATATTCTTCTTTACCCGTTAGCTCCTATTTAGAATTGCAACGTCAGAACGAGTCCTCAAAATCTGTAGGCATTCCTTCTTATGACGAATCCGAAGTGTATTTGGGATCCAAAATCGAAGACGAGGATGAAGATTTCGAAACGGACATCGATAATTACCCCCTTGTGATTGTGGGGTCCAATAAAGGCTCTGGGATACCTGGAGCTGTTTTCAATTTAACAACTACAGTTATTGGGGCAGGGATCATGGCTCTCCCTGCCACTATGAAAGTTCTAGGATTGGTTTTGGGGATTATTTTGATAATTCTTATGGGAATTTTGTCTGAAATTAGCGTGGAACTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCGTCCTATGGGGAGGTTGTTCAGCATGCAATGGGAAAACCTGTGAGGATTTTGTCTGAAATCTGCATTATTTTGAACAATGCCGGTGTTTTGGTGGTTTACTTGATAATCATGGGGGATGTTATGTCTGGTTCCTCTCACCATATGGGGGTTTTTGATCAGTTAATGGGGAATGGGGCGTGGGATCAAAGGAAGATTGTGGTTTTAGTTGTCATGGTGGTTTTCCTTGCTCCCCTTTGTTCACTTGACAAGATTGATTCATTGAGCTTGACCTCGGCTGCCTCCGTGGCTCTTGCTGTTTTGTTTGTCGTTGTTGCTTTTACAGTTGCTTTCATCAAGCTCGTGGAAGGACGGATTGATTCTCCCAGATTGGCTCCTGATCTTAGCTCCAAAACTGCAATTTTGGATTTTCTTGTTGCGATACCCATCATGACCAATGCATATGTTTGCCAGTTTAATGTGCCGCCAATATATAATGAGCTTGAACAACGGTCTCCTCAGAAAATGAACATGGTTGGCAGGTACACCACAATTTTGTGCATCCTAGTTTATGCTTCCACTTCCATATCGGGTTACCTGCTCTTTGGGAAAGACACAGAGGCTGATGTACTGACTAATTTTGATAAGGATCTTGGAATTCGGTATAGCTCGGTCTTGAACTATATTGTCCGGATTGGCTACATTCTTCATTTGATACTTGTTTTCCCTGTTATTCATTTTTCACTGCGCCAAACAGTGGACGCATTATTGTTTGAGGGATCACCTCCTCTTTCAGAAAGTAAGAAGAGATCTTTGGGGTTGACTGCGGTTCTGTTGGTCCTCATATATATTGGGTCTACCATGATTCCAAACATCTGGACAGCTTTTAAGTTCACTGGGGCAACCACGGCTGTTTCATTGGGTTTTATATTTCCTTCTCTTATTTCATTGAGACTAAGACATCTGGGAGATCTAAGCTACGGGGAATGGGTTTTGTCATGGTTGATGTTGGTATTAGCTGTGACTGTTAGCATAGTAGGAGTTGTTAGTAATGTTTATAGCCTTGAGAGTAAGTCTTAG 1446 0.4198 MSNRNEYSSLPVSSYLELQRQNESSKSVGIPSYDESEVYLGSKIEDEDEDFETDIDNYPLVIVGSNKGSGIPGAVFNLTTTVIGAGIMALPATMKVLGLVLGIILIILMGILSEISVELLVRFSVLCKASSYGEVVQHAMGKPVRILSEICIILNNAGVLVVYLIIMGDVMSGSSHHMGVFDQLMGNGAWDQRKIVVLVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVVVAFTVAFIKLVEGRIDSPRLAPDLSSKTAILDFLVAIPIMTNAYVCQFNVPPIYNELEQRSPQKMNMVGRYTTILCILVYASTSISGYLLFGKDTEADVLTNFDKDLGIRYSSVLNYIVRIGYILHLILVFPVIHFSLRQTVDALLFEGSPPLSESKKRSLGLTAVLLVLIYIGSTMIPNIWTAFKFTGATTAVSLGFIFPSLISLRLRHLGDLSYGEWVLSWLMLVLAVTVSIVGVVSNVYSLESKS 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00096 481 PANTHER AMINO ACID TRANSPORTER 66 465 - -
Vimu4g00096 481 Pfam Transmembrane amino acid transporter protein 69 470 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00096 Vimu-Chr4 564917 566362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00096 5 481 Amino Acid or Auxin Permease AAAP Family AT1G80510 71.458 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00096 - - var:108333183 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00096 4 564917 566362 Vimu4g00096 4 564917 566362 ECH