Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00090 ATGGAGCTTGTGTGGTCAGGGCCACATCCATCATCTGAAAGTGATCTGAAAATTCCATTTTCAGAGAATCCTCCACCTTGCTCAAAGCCAGTGCTAGCTTCCATGGATATCCAAAAGGAGAAGAAGGAGGACCAAGAACATCCCTATGAGTCAAAGCCAGAACTCAACCTCATAAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCATGTCATGGAGGAGGACACGGTGATGAATTGGAGCCAAGGATATTCTCATGCAACTACTGCCAAAGGAAGTTTTATAGTTCGCAGGCCCTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAGAGCTGCTGCTGCAGTTCCAACAGATTTTGCACACAGGTATTCTAGCATGGCTTCTCTGCCTCTGCATGGCTCCTATAACAGGTCACTTGGAATTCAGGCACATTCCATGATCAACAAACGCTCTTTTCAAACACAAACACCTTGTTTTGGTTTGTCCCATAGTCATGCTCAAAACTGGTGGCAGAAGCAGCCTTTGTACTCACAACAACAGGCAACTGGGACAGAATCTGAATCACCCTTGGCTGGTGGCATCCAACGGCTAGGGAAGTTTTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGCTACTGGTTGGACAGTGTTCACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 744 0.4637 MELVWSGPHPSSESDLKIPFSENPPPCSKPVLASMDIQKEKKEDQEHPYESKPELNLINCIDTNLSMNSSESCHGGGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHRAAAAVPTDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKRSFQTQTPCFGLSHSHAQNWWQKQPLYSQQQATGTESESPLAGGIQRLGKFSPRLVPEGFGGYWLDSVHHLKTKQEELHKLDLSLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00090 247 FunFam Zinc finger protein 2 64 133 - -
Vimu4g00090 247 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vimu4g00090 247 MobiDBLite consensus disorder prediction 35 51 - -
Vimu4g00090 247 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 247 IPR044246 GO:0009788
Vimu4g00090 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vimu4g00090 247 MobiDBLite consensus disorder prediction 1 51 - -
Vimu4g00090 247 SUPERFAMILY beta-beta-alpha zinc fingers 84 114 IPR036236 -
Vimu4g00090 247 Gene3D Classic Zinc Finger 67 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00090 Vimu-Chr4 493605 494348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00090 54 247 C2H2 Transcription Factor Family AT5G10970 44.131 2.03e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00090 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00090 - - vun:114185863 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00090 4 493605 494348 Vimu4g00090 4 493605 494348 ECH