Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00089 TTGGAAAAGGAGGGAACTTGGTGGGACCATGGTTTCATAGAGGAGAAAGCCGCAAAAGACTATTATATAAATGAGTGTTACCACCTTCTTCTCTCCATGAAAACTTCACTTTCACATTCTCAAAGACGCTTCACCAACAAGTTTGAAGCAGCAATCACCATCATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACCAGAATATGGCTGGGAACGTTTGAAACAGCGGAAGATGCTGCCAGAGCGTACGATGAAGCGGCAAGGTTAATGTGCGGGCCAAAAGCACGCACCAATTTCGCTTACAATCCTAAAGACCCACAATCATCTTCATCGAAGCTACTTTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCGCTTCAAATGAGCAAGCAGAAGGGATCGCAGAAAGAGGCTGAAGAAGGGTCATCCAATTCAGGCAATGCCGTTGCGGGAACGAGCACGGAGACAACAGGGTTCAGATGGGCAGAGAAGAGACACGAGGAAGTTCAGTGGGTAGAAGAATACCATGTTGAAGTGGGAGAAGCAGAACAGCAACAGTTTCAGCCAGTTCTTGAAGATGATCACATTGAACAGATGATACAGGAGCTTCTTGATTATGGTTCAATGGAGTTTAGTTGTGTGGACTCAGTCTAA 726 0.4725 MEKEGTWWDHGFIEEKAAKDYYINECYHLLLSMKTSLSHSQRRFTNKFEAAITIMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPKDPQSSSSKLLSATLTAKLHKCHMASLSLQMSKQKGSQKEAEEGSSNSGNAVAGTSTETTGFRWAEKRHEEVQWVEEYHVEVGEAEQQQFQPVLEDDHIEQMIQELLDYGSMEFSCVDSV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00089 241 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 53 169 - -
Vimu4g00089 241 SMART rav1_2 61 124 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 ProSiteProfiles AP2/ERF domain profile. 61 118 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 SUPERFAMILY DNA-binding domain 61 119 IPR016177 GO:0003677
Vimu4g00089 241 MobiDBLite consensus disorder prediction 151 180 - -
Vimu4g00089 241 Gene3D AP2/ERF domain 60 119 IPR036955 GO:0003700|GO:0006355
Vimu4g00089 241 CDD AP2 60 120 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 Pfam AP2 domain 61 110 IPR001471 GO:0003700|GO:0006355
Vimu4g00089 241 FunFam Ethylene-responsive transcription factor 2 60 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00089 Vimu-Chr4 485575 486495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00089 55 238 AP2-EREBP Transcription Factor Family AT5G25190 61.979 2.13e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu4g00089 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00089 - - gmx:100812021 328.176