Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00088 ATGGGAGGTCTCGAAGACATCAAGAACGAGGCAGTGGATCTCGTTAGTGTCTTCTTCTCTCCTTTTTCCTTTTCTTGTCTTTCTTTCTTTCTCCTTGTATTCTCAGATATTTTATGTTTTGTGTTTTTGCAGGAGCGGATTCCTGTCGATGAAGTGTTCCGCGAACTGAATTGTACTAAGGAAGGTCTCACCAATGAGGAAGGCCAAAAGAGGTTGCAAGAAAGCAAACTCCTTAAATTCTTGGGTTTTATGTGGAACCCTCTCTCATGGGTCATGGAAGCCGCTGCCATCATGGCCATTGCATTGGCAAATGGTGGGGGTGAGCCCCCAGACTGGCAAGACTTTGTTGGAATCGTGGTGTTGCTCTTTATCAACTCAACCATCAGTTTCATTGAAGAAAACAATGCCGGCAATGCTGCAGCAGCACTCATGGCAGGCCTTGCTCCCAAAGCCAAGGTTGTCAGAGATGGAAAGTGGTCTGAAGTGGACGCTTGCATACTGGTACCGGGAGATATAATCAGCATCAAACTGGGAGACATCATCCCAGCTGATGCTCGTCTCTTGGAAGGAGATTCCCTCAAGATTGATCAATCTGCACTCACGGGTGAGTCATTACCTGTTACTAGGAACCCCGGTGATGAAGTCTTCTCTGGCTCCACGGTAAAACAAGGAGAGATTGAAGCAGTTGTAATCGCTACTGGGGTTCATACCTTCTTCGGTAAGGCTGCTCACCTAGTCGACAGCACTAACCAAGTTGGCCATTTCCAAAAGGTACAATCTTTTCCACTGTCTGTCTCTGTCTGTGTTCCTGTCTGTTGTAAACTCTTTATTATGCAACTTCATATAACGCGTGTGACTTTGCATGGTAATGATCAGGTGTTGACGGCCATTGGAAATTTCTGCATTTGCTCAATTGCTGTGGGGATGATCATTGAAATTGTGGTTATGTATCCAATTCAGCACCGCAAGTACAGGAGTGGAATCAACAACCTCTTGGTCCTTCTCATTGGAGGGATTCCCATTGCCATGCCTACAGTCTTGTCAGTAACAATGGCAATTGGTTCCCACAGGCTCTCTGAGCAAGGTGCTATTACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTCTGTGCAGTGACAAAACTGGCACTCTAACACTTAACAAGCTCACTGTAGACAAGTCTTTGATTGAGGTTTTCTCAAGAGATGCTGACAAGGATACAGTGATTTTGCTTGGAGCTAGGGCCTCCAGGGTGGAAAACCAGGATGCTATTGATACTTGCATAGTTGGAATGTTGGGTGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTGCATTTTCTTCCATTCAACCCAGTGGACAAGCGCACTGCCATAACGTACATAGACAGTGAAGGTAACTGGTACCGAGTAAGCAAGGGTGCACCAGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGACGTGAAGAAGAAGGCTTTATCCATCATTGGAAAATTTGCTGATCGCGGTCTTCGTTCGCTTGCTGTCGCAAAACAAGAAGTGCCAGAAAAGACAAAGGAGAGTGCCGGAGGACCATGGCAGTTCGTGGGTCTGTTACCACTTTTTGACCCACCAAGGCATGACAGTGCTGAGACTATAAGGCGCGCTCTCCATCTTGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCTATCGGCAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCTCTCCTCGGTCAGAATAAGGATGAGTCCATGTCTGCACTTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTACGAGATAGTGAAGAGACTCCAGGACAGGAAACACATTTGTGGGATGACAGGAGATGGTGTGAACGATGCTCCTGCACTCAAAAGAGCAGATATTGGAATCGCTGTTGCAGATGCAACTGACGCAGCTCGAAGTGCATCTGACATAGTTCTCACGGAGCCTGGCTTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAATTACACCATATATGCTGTTTCTATCACCATCCGAGTGGTGTTAGGCTTTATGCTGCTTGCTCTGATATGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTGAATGATGGAACCATCATGACCATTTCCAAAGACAGGGTGAAGCCATCTCCAATGCCAGATTCCTGGAAGTTGAGAGAGATTTTTATCACCGGCATTGTTCTCGGTACCTACCTAGCTGTCATGACTGTTGTCTTCTTCTGGGCTGCTCATGCATCCAACTTTTTCTCGGACAAATTCGGAGTGAGATCCATCAGGGAAAACCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTCATCTTTGTGACACGCTCGAGGAGCTGGTCTTACGTTGAACGCCCTGGCCTGCTTCTTGTCGTTGCTTTTCTTATAGCACAGCTGATTGCCACAATCATAGCTGTGTATGCAAACTGGGGATTTGCAAAGATAAACGGCATTGGATGGGGTTGGGCTGGTGTGATTTGGCTCTACAGCATCGTTTTCTATGTTCCCATGGATATTCTCAAGTTCATCATCCGATATGGACTAACTGGAAAGGCTTGGAACAATATCACCGATAATAGGGTTGCTTTCACCGCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGCAGCTCAGCGCACATTGCATGGCTTGAACCCACCTGAAACTGATGAGATGTTGAATGAGAGAAACAACTACAGGGAGCTGTCGGAACTTGCAGAACAGGCCAAGAAAAGGGCTGAGGTTGCAAGGCTAAGGGAGCTTCACACTCTAAAGGGTCATGTTGAGTCTGTTGTGAAGCTCAAAGGACTTGACATTGAGACAATCCAGCAGCACTACACAGTGTGA 3012 0.4671 MGGLEDIKNEAVDLVSVFFSPFSFSCLSFFLLVFSDILCFVFLQERIPVDEVFRELNCTKEGLTNEEGQKRLQESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIVVLLFINSTISFIEENNAGNAAAALMAGLAPKAKVVRDGKWSEVDACILVPGDIISIKLGDIIPADARLLEGDSLKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVQSFPLSVSVCVPVCCKLFIMQLHITRVTLHGNDQVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSRDADKDTVILLGARASRVENQDAIDTCIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGNWYRVSKGAPEQIIELCNLREDVKKKALSIIGKFADRGLRSLAVAKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQNKDESMSALPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFITGIVLGTYLAVMTVVFFWAAHASNFFSDKFGVRSIRENHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFLIAQLIATIIAVYANWGFAKINGIGWGWAGVIWLYSIVFYVPMDILKFIIRYGLTGKAWNNITDNRVAFTAKNDYGKGEREAQWAAAQRTLHGLNPPETDEMLNERNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00088 1003 Gene3D - 149 233 - -
Vimu4g00088 1003 CDD P-type_ATPase_H 62 893 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu4g00088 1003 Gene3D - 393 540 IPR023299 GO:0000166
Vimu4g00088 1003 SFLD C1.7: P-type atpase like 363 692 - -
Vimu4g00088 1003 NCBIfam plasma-membrane proton-efflux P-type ATPase 291 858 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu4g00088 1003 SUPERFAMILY Calcium ATPase, transduction domain A 149 246 IPR008250 -
Vimu4g00088 1003 Coils Coil 947 974 - -
Vimu4g00088 1003 SMART Cation_ATPase_N_a_2 43 104 IPR004014 -
Vimu4g00088 1003 PANTHER CALCIUM-TRANSPORTING ATPASE 47 935 - -
Vimu4g00088 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Vimu4g00088 1003 FunFam ATPase 4 plasma membrane-type 625 867 - -
Vimu4g00088 1003 Pfam E1-E2 ATPase 148 360 - -
Vimu4g00088 1003 NCBIfam HAD-IC family P-type ATPase 118 241 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 NCBIfam HAD-IC family P-type ATPase 615 725 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 Gene3D - 111 867 - -
Vimu4g00088 1003 Gene3D - 378 677 IPR023214 -
Vimu4g00088 1003 PRINTS H+-transporting ATPase (proton pump) signature 612 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 PRINTS H+-transporting ATPase (proton pump) signature 497 515 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 PRINTS H+-transporting ATPase (proton pump) signature 640 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 PRINTS H+-transporting ATPase (proton pump) signature 812 833 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 PRINTS H+-transporting ATPase (proton pump) signature 671 696 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu4g00088 1003 FunFam Plasma membrane ATPase 533 688 - -
Vimu4g00088 1003 SUPERFAMILY HAD-like 377 687 IPR036412 -
Vimu4g00088 1003 SFLD p-type atpase 363 692 IPR044492 -
Vimu4g00088 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 46 897 IPR023298 -
Vimu4g00088 1003 Gene3D - 952 1003 - -
Vimu4g00088 1003 FunFam Plasma membrane ATPase 149 233 - -
Vimu4g00088 1003 Pfam haloacid dehalogenase-like hydrolase 377 654 - -
Vimu4g00088 1003 FunFam Plasma membrane ATPase 393 540 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 663 675 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 640 659 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 196 210 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 535 546 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 557 567 - -
Vimu4g00088 1003 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00088 Vimu-Chr4 478086 482060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00088 45 1003 Primary Pumps ATPases AT3G42640 78.866 0.0 1544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00088 K01535 - gmx:100796240 1647.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00088 4 478086 482060 Vimu4g00088 4 478086 482060 ECH