Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00085 ATGGGGGACCCTGAAGGAGTTAGAGAACAAGTGTATAATTTGAAAAAAGAAGAGGTAAACAGCATAAATGGTGATGACCCACATGCAGCCAAAACTCGTTTCAAAATTGAACAAGAAAAGAAAGAAGCTTCTCTTGACAACAAGTTATTCCATTCCACTCTCTCTCCTTCGACAAGGACACCCCAGATGAATCTTCTTGTTCTCTTCCTACCTATTTGGGTGCTTAGCATTTCTCTTTCATCGCCAATTCTTCATGCTACATCTTTCATTTCTGTTTCTCAAAATGCAGAAGCTGAGTCTCCAGTGCACCATCAGAATTTGAATAAGAGAATTCTAATTGCATTAGTTGCTTGTTCTGGTCTTCTTGGTGGAGTCTTCCTAATCATAGTTTATGTCTGGTTCCGTCGACATAAAACCTTAAAACTCTCCAGAAGTAAAAGCCAAGAAACCACCGAGGCAGCAAAAGGGGAGACTTTAAGCTCGGTTAATGCAAAACTTAACTACTCAAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTGGAGGCTGCCACGAACAGCTTTAGCACAAGCAGTATTATGAGAAAGAGTGGTTCTAGAATCATTTACAGAGCTAACTTTGATGAGCATTTCCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGCCATCAGAATATCATAAAACTTATGGGTTATTGTGTTCATGGTCAATCGAGGTTTCTTGTTTATGAATTGATGGAGAACGGGTCTCTGGAAACTCAATTGCATGGTCCTAATCGAGGGTCATCTTTAACCTGGTATCTAAGGTTACGAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCATGAACACTCCAATCCTCCTGTGGTTCATCGAGACTTACAATCTTCCAATGTTCTTCTGGATTCTAACTTTAACGCGAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACATAAGAACATGAAGATGTCAGGAACTTTAGGATACGTGGCCCCTGAGTACATATCACATGTGACTGCTGCCATTACTAGGTTTAAGCTGACTGAAAGTATGAAGCTTGATCTTTCCATTTTTCCATTTTCCTTCAAAATGAATGTAACAAGAACCAGCTTTTCAGGTAAACTAACTGACAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTCCTAGAACTCCTAACCGGAAGAAAACCCATGGAGAACATGACCTCAAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACTGACAGATCGAAGCTTCCAAGTATTCTTGATCCTGTTATCAGAGACACAATGGATTTGAAGCACTTGTATCAGGTTGCTGCAGTTGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTCATAACAGACGTGCTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCATTAAGAGTTACAGAACCCATCAGCTCAGAGAACTCTCATTGA 1557 0.4123 MGDPEGVREQVYNLKKEEVNSINGDDPHAAKTRFKIEQEKKEASLDNKLFHSTLSPSTRTPQMNLLVLFLPIWVLSISLSSPILHATSFISVSQNAEAESPVHHQNLNKRILIALVACSGLLGGVFLIIVYVWFRRHKTLKLSRSKSQETTEAAKGETLSSVNAKLNYSRMADKKSSVAIFDYQLLEAATNSFSTSSIMRKSGSRIIYRANFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLMGYCVHGQSRFLVYELMENGSLETQLHGPNRGSSLTWYLRLRIAVDVARALEYLHEHSNPPVVHRDLQSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHVTAAITRFKLTESMKLDLSIFPFSFKMNVTRTSFSGKLTDKSDVYAFGVVLLELLTGRKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00085 518 SUPERFAMILY Protein kinase-like (PK-like) 169 494 IPR011009 -
Vimu4g00085 518 FunFam Os07g0541700 protein 266 354 - -
Vimu4g00085 518 Gene3D Transferase(Phosphotransferase) domain 1 266 499 - -
Vimu4g00085 518 ProSiteProfiles Protein kinase domain profile. 193 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00085 518 Gene3D Phosphorylase Kinase; domain 1 152 265 - -
Vimu4g00085 518 PANTHER OS01G0750732 PROTEIN 97 498 - -
Vimu4g00085 518 Pfam Protein kinase domain 219 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00085 518 Pfam Protein tyrosine and serine/threonine kinase 398 451 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00085 Vimu-Chr4 467249 471280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00085 63 440 Receptor kinase-like Gene Family AT1G80640 41.584 3.26e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vimu4g00085 Pkinase 1.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00085 - - gmx:100811188 729.939