Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00082 | ATGGAGCAACCATGGCAGAATTGCTCTCTTCAAATGGAAATGGACGATGACAGCCATGGGGATCTGATGATGTTAGAAGAGTGCCACATACAAGAGGAGGAGTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTCAAACTGAAACTCACCACCACAACTTCACAACCCCCCTAACAATGGTAGGTTCAAAATCCAAAACCTCTTCTTCTCCCAGAACATATATTTTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTCCTTCCACTCTCTCCGGCAACAAACGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAACTCCACAACCCAAACTGGAAAGAGGGCCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATTCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGGCGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGTGATGTGTGTGATTCAAGTGAAAGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATTGAGATTCACTGTGAGAAGGAAGAAGGGGTTGAGCTAAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTCAACGATGTAGTGAAAAATCTGAGGAAAGTCTTCATGAATCACATGAACATCCATGGCGATCCGTACTAG | 921 | 0.4625 | MEQPWQNCSLQMEMDDDSHGDLMMLEECHIQEEEFLREILGEPGFSSQTETHHHNFTTPLTMVGSKSKTSSSPRTYILSFDSSTIIPATPQPPSPSTLSGNKRHQNLNPEQPKPNSTTQTGKRARNGSVDHIMAERKRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVAELEERNKRGKESVMILKKSDVCDSSERDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVNDVVKNLRKVFMNHMNIHGDPY | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00082 | 306 | Gene3D | - | 116 | 192 | IPR036638 | GO:0046983 | |
Vimu4g00082 | 306 | Coils | Coil | 165 | 192 | - | - | |
Vimu4g00082 | 306 | MobiDBLite | consensus disorder prediction | 47 | 132 | - | - | |
Vimu4g00082 | 306 | PANTHER | BHLH TRANSCRIPTION FACTOR | 5 | 298 | - | - | |
Vimu4g00082 | 306 | MobiDBLite | consensus disorder prediction | 95 | 125 | - | - | |
Vimu4g00082 | 306 | Pfam | Helix-loop-helix DNA-binding domain | 131 | 175 | IPR011598 | GO:0046983 | |
Vimu4g00082 | 306 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 130 | 195 | IPR036638 | GO:0046983 | |
Vimu4g00082 | 306 | SMART | finulus | 132 | 181 | IPR011598 | GO:0046983 | |
Vimu4g00082 | 306 | MobiDBLite | consensus disorder prediction | 47 | 87 | - | - | |
Vimu4g00082 | 306 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 126 | 175 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00082 | Vimu-Chr4 | 452192 | 453960 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00082 | 15 | 299 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G37850 | 37.288 | 1.09e-46 | 158 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vimu4g00082 | HLH | 8e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00082 | - | - | pvu:PHAVU_005G181300g | 429.869 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g00082 | 4 | 452192 | 453960 | Vimu11g02747 | 11 | 47757487 | 47758526 | PCT | |
Vimu11g02748 | 11 | 47765676 | 47769704 | Vimu4g00082 | 4 | 452192 | 453960 | PCT |