Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00082 ATGGAGCAACCATGGCAGAATTGCTCTCTTCAAATGGAAATGGACGATGACAGCCATGGGGATCTGATGATGTTAGAAGAGTGCCACATACAAGAGGAGGAGTTCCTCAGGGAGATACTTGGTGAACCGGGTTTTTCTTCTCAAACTGAAACTCACCACCACAACTTCACAACCCCCCTAACAATGGTAGGTTCAAAATCCAAAACCTCTTCTTCTCCCAGAACATATATTTTGTCTTTCGATAGCTCTACCATTATACCAGCCACCCCTCAACCACCGTCTCCTTCCACTCTCTCCGGCAACAAACGCCACCAAAATCTCAACCCAGAACAACCAAAACCCAACTCCACAACCCAAACTGGAAAGAGGGCCAGAAACGGTTCCGTGGACCACATCATGGCCGAAAGAAAAAGGAGACAGGAACTCACCGAGAGGTTCATAGCACTTTCAGCCACCATTCCCGGTCTCAAGAAGACGGACAAGAGTTCGATACTGGGGGAAGCGATTAATTACGTGAAAGAACTCAAAGAACGTGTGGCGGAGCTTGAAGAGAGAAACAAGAGAGGGAAAGAATCGGTGATGATCCTGAAGAAGAGTGATGTGTGTGATTCAAGTGAAAGAGATTCGAAGGATTGGTGTAGAATGCTCCCTGATATTGAAGCAAGAGTGATGGAGAATGAGGTGCTGATTGAGATTCACTGTGAGAAGGAAGAAGGGGTTGAGCTAAAATTATTGGACCACCTTGAAAATCTTCATCTCTGTGTCACCGCCACCAGCGTGTTGCCCTTTGGAAATTCAACTCTTGGCATTACCATCATCGCTCAGATGGGTGACGCGTACAAGATGACAGTCAACGATGTAGTGAAAAATCTGAGGAAAGTCTTCATGAATCACATGAACATCCATGGCGATCCGTACTAG 921 0.4625 MEQPWQNCSLQMEMDDDSHGDLMMLEECHIQEEEFLREILGEPGFSSQTETHHHNFTTPLTMVGSKSKTSSSPRTYILSFDSSTIIPATPQPPSPSTLSGNKRHQNLNPEQPKPNSTTQTGKRARNGSVDHIMAERKRRQELTERFIALSATIPGLKKTDKSSILGEAINYVKELKERVAELEERNKRGKESVMILKKSDVCDSSERDSKDWCRMLPDIEARVMENEVLIEIHCEKEEGVELKLLDHLENLHLCVTATSVLPFGNSTLGITIIAQMGDAYKMTVNDVVKNLRKVFMNHMNIHGDPY 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00082 306 Gene3D - 116 192 IPR036638 GO:0046983
Vimu4g00082 306 Coils Coil 165 192 - -
Vimu4g00082 306 MobiDBLite consensus disorder prediction 47 132 - -
Vimu4g00082 306 PANTHER BHLH TRANSCRIPTION FACTOR 5 298 - -
Vimu4g00082 306 MobiDBLite consensus disorder prediction 95 125 - -
Vimu4g00082 306 Pfam Helix-loop-helix DNA-binding domain 131 175 IPR011598 GO:0046983
Vimu4g00082 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 195 IPR036638 GO:0046983
Vimu4g00082 306 SMART finulus 132 181 IPR011598 GO:0046983
Vimu4g00082 306 MobiDBLite consensus disorder prediction 47 87 - -
Vimu4g00082 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00082 Vimu-Chr4 452192 453960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00082 15 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.288 1.09e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g00082 HLH 8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00082 - - pvu:PHAVU_005G181300g 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00082 4 452192 453960 Vimu11g02747 11 47757487 47758526 PCT
Vimu11g02748 11 47765676 47769704 Vimu4g00082 4 452192 453960 PCT