Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g00081 | ATGGAGGAAAACCAGTGGGGGAAGTTGTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAAGCCCTTTGATGAAGAGTTTTTAAGAGATATTCTACAGCAGCCGCAAGAGGGTGCAGCTCCAGATCTTAATAGTTTTGGTGAGACAAGCTGTGTGGTAAGGGCAGGTGGTGGTGATAAGTTGATGATGAAGAACAGCAACTCATCCATGATGAATCTTTGTGGTGAAAATAAGAACAAGGCAACCACATCTCCAACCACCTATGTACTGTCTTTTGACAAATCCGATGATCCTCATTCGGTGTCTGCTTGGAAAGATGTCTCCCACAACTTGCCTTTGTCCTCGACAAGGACCAACCAGGGAACAAGGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGTTTGAAGAAGTCAGAAACTGTGGGATCAAGTATATTGGAAGGTACATCAGATCGTGTCGTGAGGGTTAATAGAGGAATATGCTCATGTCATAGGAAAGGTAAGAATAGTACCATGAAGCTTCTGAAACCTGTTCGTGTAGTCGTGGCACAAGACAACGATATGTGGTATGAAACCATGGACGCAGAGAATAGTGGCTCGTGGAAGATGGACAAGGCACATGTACTAAGAGAAGCATTAAATTACGTGAAGCAACTGAAAGAACGTGTACAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCATCGATCACCATAACAAGATCTCATCTATGCATTGATGACACAAACAGTGATGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAATGTTGATCAAAATTCACTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAACGTCTTCATCTCTTGATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTGGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCGTGTGTGTCACAGTGA | 1146 | 0.4328 | MEENQWGKLSSHMEMEDEVLNECLCQTKPFDEEFLRDILQQPQEGAAPDLNSFGETSCVVRAGGGDKLMMKNSNSSMMNLCGENKNKATTSPTTYVLSFDKSDDPHSVSAWKDVSHNLPLSSTRTNQGTRKTRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKSETVGSSILEGTSDRVVRVNRGICSCHRKGKNSTMKLLKPVRVVVAQDNDMWYETMDAENSGSWKMDKAHVLREALNYVKQLKERVQVLEEDIQKNGAESSITITRSHLCIDDTNSDEWYGSNEAVPAEVEARVLGKQMLIKIHCGKQKGILLKILSQLERLHLLISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCVSQ | 381 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g00081 | 381 | MobiDBLite | consensus disorder prediction | 119 | 142 | - | - | |
Vimu4g00081 | 381 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 136 | 250 | IPR011598 | GO:0046983 | |
Vimu4g00081 | 381 | Gene3D | - | 126 | 266 | IPR036638 | GO:0046983 | |
Vimu4g00081 | 381 | PANTHER | BHLH TRANSCRIPTION FACTOR | 33 | 374 | - | - | |
Vimu4g00081 | 381 | MobiDBLite | consensus disorder prediction | 119 | 133 | - | - | |
Vimu4g00081 | 381 | Coils | Coil | 240 | 267 | - | - | |
Vimu4g00081 | 381 | SMART | finulus | 142 | 256 | IPR011598 | GO:0046983 | |
Vimu4g00081 | 381 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 140 | 268 | IPR036638 | GO:0046983 | |
Vimu4g00081 | 381 | Pfam | Helix-loop-helix DNA-binding domain | 141 | 251 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g00081 | Vimu-Chr4 | 445704 | 448203 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g00081 | 230 | 370 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G37850 | 45.205 | 6.83e-28 | 110 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vimu4g00081 | HLH | 1.3e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g00081 | - | - | vum:124843254 | 322.783 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g00081 | 4 | 445704 | 448203 | Vimu11g02746 | 11 | 47751882 | 47753403 | PCT | |
Vimu11g02747 | 11 | 47757487 | 47758526 | Vimu4g00081 | 4 | 445704 | 448203 | PCT |