Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00081 ATGGAGGAAAACCAGTGGGGGAAGTTGTCTTCCCATATGGAAATGGAGGATGAGGTGTTGAATGAATGTTTGTGCCAGACGAAGCCCTTTGATGAAGAGTTTTTAAGAGATATTCTACAGCAGCCGCAAGAGGGTGCAGCTCCAGATCTTAATAGTTTTGGTGAGACAAGCTGTGTGGTAAGGGCAGGTGGTGGTGATAAGTTGATGATGAAGAACAGCAACTCATCCATGATGAATCTTTGTGGTGAAAATAAGAACAAGGCAACCACATCTCCAACCACCTATGTACTGTCTTTTGACAAATCCGATGATCCTCATTCGGTGTCTGCTTGGAAAGATGTCTCCCACAACTTGCCTTTGTCCTCGACAAGGACCAACCAGGGAACAAGGAAGACTCGAAGCGCTTCTGAATCAATGGATCACATCATGTCAGAGAGAAAGAGGAGACAGGAACTCACCAGAAAATTCATAGCACTTGCTTCCACTATCCCTGGTTTGAAGAAGTCAGAAACTGTGGGATCAAGTATATTGGAAGGTACATCAGATCGTGTCGTGAGGGTTAATAGAGGAATATGCTCATGTCATAGGAAAGGTAAGAATAGTACCATGAAGCTTCTGAAACCTGTTCGTGTAGTCGTGGCACAAGACAACGATATGTGGTATGAAACCATGGACGCAGAGAATAGTGGCTCGTGGAAGATGGACAAGGCACATGTACTAAGAGAAGCATTAAATTACGTGAAGCAACTGAAAGAACGTGTACAAGTGCTAGAAGAAGATATCCAGAAGAACGGTGCAGAATCATCGATCACCATAACAAGATCTCATCTATGCATTGATGACACAAACAGTGATGAATGGTATGGGTCCAATGAAGCAGTTCCTGCTGAAGTTGAAGCCAGAGTCTTAGGGAAGCAAATGTTGATCAAAATTCACTGTGGAAAACAAAAGGGTATTCTGCTCAAAATATTGTCTCAGCTTGAACGTCTTCATCTCTTGATATCCACTAGCAATGTCTTGCCACTTGGAAGTACCATTGACATCACCATCATTGCTCAGATGGGTGATGAATACAAGATGGTGGTGAAGGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCGTGTGTGTCACAGTGA 1146 0.4328 MEENQWGKLSSHMEMEDEVLNECLCQTKPFDEEFLRDILQQPQEGAAPDLNSFGETSCVVRAGGGDKLMMKNSNSSMMNLCGENKNKATTSPTTYVLSFDKSDDPHSVSAWKDVSHNLPLSSTRTNQGTRKTRSASESMDHIMSERKRRQELTRKFIALASTIPGLKKSETVGSSILEGTSDRVVRVNRGICSCHRKGKNSTMKLLKPVRVVVAQDNDMWYETMDAENSGSWKMDKAHVLREALNYVKQLKERVQVLEEDIQKNGAESSITITRSHLCIDDTNSDEWYGSNEAVPAEVEARVLGKQMLIKIHCGKQKGILLKILSQLERLHLLISTSNVLPLGSTIDITIIAQMGDEYKMVVKDLVKELRQVAMMKSCVSQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00081 381 MobiDBLite consensus disorder prediction 119 142 - -
Vimu4g00081 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 250 IPR011598 GO:0046983
Vimu4g00081 381 Gene3D - 126 266 IPR036638 GO:0046983
Vimu4g00081 381 PANTHER BHLH TRANSCRIPTION FACTOR 33 374 - -
Vimu4g00081 381 MobiDBLite consensus disorder prediction 119 133 - -
Vimu4g00081 381 Coils Coil 240 267 - -
Vimu4g00081 381 SMART finulus 142 256 IPR011598 GO:0046983
Vimu4g00081 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 268 IPR036638 GO:0046983
Vimu4g00081 381 Pfam Helix-loop-helix DNA-binding domain 141 251 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00081 Vimu-Chr4 445704 448203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00081 230 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.205 6.83e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g00081 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00081 - - vum:124843254 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00081 4 445704 448203 Vimu11g02746 11 47751882 47753403 PCT
Vimu11g02747 11 47757487 47758526 Vimu4g00081 4 445704 448203 PCT