Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00080 ATGTGGAGTTCCACTTCAAGCATAGCGATTGCAGCACCCTCCTCCGACGAGGATCCCAGCCAGTCCTCTTCGTCTTCCTTCTCCACTTCTCTCTTCAATTTCTCTTCTGGAAACCCTACAATCGAAGAGACCCGTGGCCTCATGCATCTATTCCCCGACGACGTTCCTGCTACTCTTCCGGTTGGACGCAAACCTCTTGTTTGCGTTGTCGGCGTCCCCAATCACATGACCTATGCGGATTTCTGTCAGTTCTGTGGTTCCTTCATTCAACACATGCTAGAGATGCGCATTGTTAGGATGGACGGTATGGAGGATCAGTATAGTGTCTTGATTCGCTTTGACCACCAAGAGTCCACCGACAGCTTCTTCAAGCACTACCATGGCCGCCGATTCTCCTCTCTTGAGGTAGAAGTTTGCCGAGTTCTTTTCACGTTAGACGTGCAGTACACTGGTTCCATTGAACATGCGCAACCCTCAAATGCCAGCTCAACTGAACAGCCAACTTGTCCTGTTTGTCTTGAGCGATTAGATCAAGACACCGGTGGAATTCTCACAACTATATGCAACCATTCTTTCCATTGTTCTTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCGATTTGTTTTGTCTGTCAAACCACTGAGAACCTGTGGATATGCGTTATATGTGGGCATGTTGGCTGCGGAAGATACAAGGGAGGGCATGCTATAATACACTGGAAAGAGACGCAGCATTGCTATTCCCTAGAAGTGGAAACCAAACGTGTGTGGGATTATGTGGGAGACAATTATGTTCACAGACTTATTCAGTCCAAAACTGATGGGAAATTGGTTGAGCTGAACGCTCACTGTGCACACGCAGATAATGAATGTGGAAGTTGCAGCTGTGAAGACAATGCCATGAGTGAGGCTATACTTAATAGTAAAGTCGAAGCTGTAATGTTTTAA 984 0.4654 MWSSTSSIAIAAPSSDEDPSQSSSSSFSTSLFNFSSGNPTIEETRGLMHLFPDDVPATLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQESTDSFFKHYHGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGHVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADNECGSCSCEDNAMSEAILNSKVEAVMF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00080 327 SUPERFAMILY RING/U-box 185 284 - -
Vimu4g00080 327 Coils Coil 325 327 - -
Vimu4g00080 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 209 IPR013083 -
Vimu4g00080 327 ProSiteProfiles Zinc finger UBP-type profile. 203 296 IPR001607 GO:0008270
Vimu4g00080 327 CDD RRM_BRAP2_like 67 148 - -
Vimu4g00080 327 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Vimu4g00080 327 CDD RING-H2_BRAP2 167 210 IPR047243 -
Vimu4g00080 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 290 IPR013083 -
Vimu4g00080 327 MobiDBLite consensus disorder prediction 1 24 - -
Vimu4g00080 327 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
Vimu4g00080 327 PANTHER BRCA1-ASSOCIATED PROTEIN 12 325 - -
Vimu4g00080 327 SMART Zf_UBP_1 219 268 IPR001607 GO:0008270
Vimu4g00080 327 Pfam Ring finger domain 168 209 IPR001841 -
Vimu4g00080 327 SMART ring_2 169 208 IPR001841 -
Vimu4g00080 327 Pfam Zn-finger in ubiquitin-hydrolases and other protein 220 279 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00080 Vimu-Chr4 442301 445823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00080 165 209 C3H Transcription Factor Family AT1G72220 46.809 4.86e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00080 K10632 - gmx:100794688 613.994