Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00077 ATGGATTATTCATCACGGATTAACACTTCATTGGATCTCAATCTCAATCCTCGCAGGCTGCATGAAGAATTTCCCAAAAAGGAGGTGGAACACAATTTTTTCTCTTTGGGGGTGAAGAAATCCTCTGTAAAAGAACAGCAGTCTTCCAGTGCCTTGGTGGAGGAGCTGAAGCGGGTGAGTGCAGAAAACAAGAAGTTGACCGAAATGCTGACGGAGATGTGTGAGAACTACAACGCTATGCGAAGCAATTTGATGGAATATATGAGGAAGAATCCTGATAAGGAGCAAAGCTCATCGAAGAAAAGGAAGTCAGAAAACAGCTTCAACAATAGTGCTCCGAAGAGCATGCACGGAAACTCCGAGAGCAGCTCAACCGATGAAGAATCATGCAAGAAACCAAAGGAAGACATCAAGACACCAGTTTCAAAAGTTTACGTGAGGACAGAAGCATCTGATACAAGCCTGATTGTGAAAGATGGATATCAGTGGAGGAAATACGGACAAAAGGTTACCAGGGATAACCCTTCTCCAAGAGCTTACTTCAAGTGCTCTTTTGCTCCAAGCTGCCCGGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTTCTCAAATGGAGCCAACCGCAGGCTCCAATCGTGGTGTGACCCCATGTTCAGGGTCTCTCAGCTCTTCCGCACCAACAACAGTTACCCTTGACTGGACAAAATCCAAGTCCAGCACCGATTCCAAGAACATAACTCCCAAAATGGATGCACCACAAATCCCTCAGGTTTTGGTAGAACAGATGGCCACTTCCCTGACCAAGGATCCTAATTTCAGAGCAGCACTACTTGCCGCAATCTCAGGAAAAATGTTGCACAATAATTGA 918 0.4532 MDYSSRINTSLDLNLNPRRLHEEFPKKEVEHNFFSLGVKKSSVKEQQSSSALVEELKRVSAENKKLTEMLTEMCENYNAMRSNLMEYMRKNPDKEQSSSKKRKSENSFNNSAPKSMHGNSESSSTDEESCKKPKEDIKTPVSKVYVRTEASDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEPTAGSNRGVTPCSGSLSSSAPTTVTLDWTKSKSSTDSKNITPKMDAPQIPQVLVEQMATSLTKDPNFRAALLAAISGKMLHNN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00077 305 FunFam WRKY transcription factor 40 142 219 - -
Vimu4g00077 305 MobiDBLite consensus disorder prediction 103 123 - -
Vimu4g00077 305 MobiDBLite consensus disorder prediction 220 243 - -
Vimu4g00077 305 Pfam WRKY DNA -binding domain 158 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00077 305 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 301 IPR044810 GO:0003700
Vimu4g00077 305 MobiDBLite consensus disorder prediction 212 243 - -
Vimu4g00077 305 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00077 305 MobiDBLite consensus disorder prediction 91 136 - -
Vimu4g00077 305 Coils Coil 49 76 - -
Vimu4g00077 305 SUPERFAMILY WRKY DNA-binding domain 154 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g00077 305 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g00077 305 Gene3D WRKY domain 141 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00077 Vimu-Chr4 427754 429165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00077 4 305 WRKY Transcription Factor Family AT1G80840 54.062 5.79e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g00077 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00077 - - gsj:114388658 473.396