Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00070 ATGCCTTCAAGACCCTTTCCTCCCACAAGTCCCACCAAAACCAAGGCCCTCTTCCTAGCACTCACCATTTCAGCTTGTGTTGTTATTTTCTGTTCAATTGTTTACTTCCTCTACCATCTGTGGCTTTCTCTAGTTCACAGGGCTAAGACCATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTTCAAAGATTCTCGTACAAAGATTTAAAGCAGGCCACCAATGGCTTCGATACTGCCAATGTAATTGGCAAAGGCGGCTCTGGCACTGTTTTCAGAGGCGTACTTAAAGACGGCAAGTTGATTGCCATCAAGCGTCTGGACGCATTGTCTTTGCAGTCAGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTCTTGGTGACTCTTTTGGGTTACTGTGTGGAAAGGAACAAAAGAGTGCTGGTGTATGAGTATATGCCCAACAAAAGCTTGCAGGAGTCCCTCTTTGGAGATGAGGGTTTGAGTTTGAGTTGGGAGAGAAGGTTTTGCATAATATTGGATGTTGCTAGAGCTATGGAGTTCTTGCACCTTGGATGTGATCCTCCGGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTGCTTGATGCAGAGTGGCGTGGGAAGATCTCCGACTTTGGCTTGTCAAGGATTAAGGTGGAGGGTGAGTTTGGTGTTGACTTGTTTAGCCAGGACCTAGGGAGGAGCCAGGATCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTGACTAATTTGACTGCAGAAACTCCTGCTATCGGTACTCCGGTTGAGAGTGTCAGTGAAGTAGATTTTGCTCTAGCTTTGCAAGCCTCTTCTTCATCAAAAAATAGTAGGACCTGCTTTAATGTTAAAGCTTTGAATTTGAATTCTTTGAATTATAATGCCAATATTGCTGGTGAAAGTGAAATCAGGAGTGTGAATGTAAAGGGTAAAGAAATTTCAGCTTTGGATAGAGATGATTGGAATGGTAAGTTTTTTCCTTATGATGATGAGCTTTCTAGCATTGATTATAGTAAGGAGTTAACAGTGAATGCTTCTCCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGCGGGGAGTTATGTAGTAAAGACTATGTTATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATCATGGTAAGAACAATGTTCACGAGAAAGTGGAATTGGAAACTTCAAGCCCAAAGGATAAAGACCAAGATGCAATTGCACCCCAGTCACAGGTGTTTGGGATAGGACACAATACTACAGATAATGGGATTGAGAAAAAACAGTCAAGGGGAAAGAAAAATCACAAAAAGAAACACAGGAAGATGCAAGAGTGGTGGAGAGAAGAGCATCTAGCTGAATTAAGCAAGAAGACCAATAAACTGAAAAATCTTCACTCTAAATGGAAGAAAGGCATGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAAGTTTGGAGAGGAGGATCAGGATGAATGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGCTGGAAGAAAAAGAGTACTCTTTCCATTGGTAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAGCTTAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTGGCACCAGAATATGGAGGGTGTGGATTCTTGATGGAGAAAGCTGATATTTATAGTTTTGGAGTTTTGATTCTTGTAATCGTGTCAGGTAGGAGACCGTTACATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCAAACCTCATAAGCTGGTGTAGACACTTGGCTCAAGTTGGTAACATTTTAGAACTAGTGGATGAGAGATTGAAAGAAGATTTCAACAAGGAGCAAGCAAGCCTGTGTATCAATTTGGCACTCACTTGCTTACAGAAAATCCCTGAGTTGAGGCTAGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGATCTTCCACCACTTCCATTTGAGCTCTCCCCTTCTCCACCTTCCAAATTATACGGCAAAGCAAGGAGAAAACAGAAGATCACTGCAGAATAG 2139 0.4292 MPSRPFPPTSPTKTKALFLALTISACVVIFCSIVYFLYHLWLSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGVLKDGKLIAIKRLDALSLQSEREFQNELQILGGLRSPFLVTLLGYCVERNKRVLVYEYMPNKSLQESLFGDEGLSLSWERRFCIILDVARAMEFLHLGCDPPVIHGDIKPSNVLLDAEWRGKISDFGLSRIKVEGEFGVDLFSQDLGRSQDLWKSQELSGNLTNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIAGESEIRSVNVKGKEISALDRDDWNGKFFPYDDELSSIDYSKELTVNASPLVDDEKANGKQWGKDWWWRQDGSGELCSKDYVMEWIGSQICPSNPDWDHGKNNVHEKVELETSSPKDKDQDAIAPQSQVFGIGHNTTDNGIEKKQSRGKKNHKKKHRKMQEWWREEHLAELSKKTNKLKNLHSKWKKGMKVPHFDLGRRFYLCRRKKFGEEDQDECDQNGEFSFRRGWKKKSTLSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQVGNILELVDERLKEDFNKEQASLCINLALTCLQKIPELRLDIGDIVKILKGEMDLPPLPFELSPSPPSKLYGKARRKQKITAE 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00070 712 FunFam putative receptor-like protein kinase At1g80870 152 263 - -
Vimu4g00070 712 MobiDBLite consensus disorder prediction 693 712 - -
Vimu4g00070 712 PANTHER OS07G0586332 PROTEIN 10 707 IPR044576 -
Vimu4g00070 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 45 151 - -
Vimu4g00070 712 Coils Coil 474 494 - -
Vimu4g00070 712 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Vimu4g00070 712 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vimu4g00070 712 SMART serkin_6 76 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00070 712 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Vimu4g00070 712 FunFam Receptor-like serine/threonine-protein kinase At4g25390 535 684 - -
Vimu4g00070 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vimu4g00070 712 SUPERFAMILY Protein kinase-like (PK-like) 56 697 IPR011009 -
Vimu4g00070 712 Pfam Protein kinase domain 78 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00070 712 MobiDBLite consensus disorder prediction 440 465 - -
Vimu4g00070 712 Gene3D Transferase(Phosphotransferase) domain 1 152 263 - -
Vimu4g00070 712 Gene3D Transferase(Phosphotransferase) domain 1 533 684 - -
Vimu4g00070 712 ProSiteProfiles Protein kinase domain profile. 76 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00070 Vimu-Chr4 387591 389729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00070 546 678 Receptor kinase-like Gene Family AT3G58690 29.851 1.62e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vimu4g00070 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00070 - - gmx:100807432 1326.61