Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00064 ATGGACAATAACGAGGAAATCCCTTCAACACCTGCCACACCAGGCACTCCAGGTGCACCTCTTTTTGGAGGTTTCACCAATGCCACCAATAGGACTAATAATAGTAATAAGAACTCTCTTCTCAAGAGTTGTAGATGCTTCACTGTGGCGGATTGGAGCATAGAAGATGGAGCTTTACCGCCCGTCTCATGTTCTTTGCCATCACCTCCTCACGTTCCTTTGGCAAGAAAAGTTGGTGCTGAGTTCATCGGAACCTTCATTCTCATGTTTGCTGCCACTGCCGCTGCCATTGTCAACCAGAAAACAAACGGTTCTGAGACCCTTATAGGTTGTGCTGCCACTACTGGTCTCGCCGTTATGATAGTCATCCTTGCCACTGGTCACATCTCCGGTGCTCATCTCAACCCGGCTGTCACTCTTTCCTTTGCTGCATTGAAGCACTTTCCTTGGAAACATGTACCTATGTATATTGGTGCACAAGTTTTGGCATCGATTTGTGCCGCATTTGCTCTTAAAGGGGTTTATCATCCTTTCATGAGTGGTGGAGTCACAGTTCCTTCCGGAGGATATAGCCAATCTTTCGCTTTAGAATTCATTATTACTTTCAATCTAATGTTTGTTGTCACAGCAGTTGCCACCGACACCAGAGCTGTGGGAGAACTGGCGGGAATTGCGGTAGGAGCCACTGTAATGCTCAACATACTTATAGCAGGGCCAGTATCAGGCGGTTCAATGAACCCAGTAAGAACACTAGGTCCTGCTGTTGCAGCAAACAATTACAAAGCTATATGGGTTTATCTGATAGCTCCAGTACTTGGAGCTTTAGCGGGTGCAGGTACTTACACTGCAGTAAAACTGTCCGAAGAAAACGATGATGCCAATGCAAAGGCTTCAATCAGCTTCAGAAGATGA 912 0.4627 MDNNEEIPSTPATPGTPGAPLFGGFTNATNRTNNSNKNSLLKSCRCFTVADWSIEDGALPPVSCSLPSPPHVPLARKVGAEFIGTFILMFAATAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPMYIGAQVLASICAAFALKGVYHPFMSGGVTVPSGGYSQSFALEFIITFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLIAPVLGALAGAGTYTAVKLSEENDDANAKASISFRR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00064 303 SUPERFAMILY Aquaporin-like 71 289 IPR023271 -
Vimu4g00064 303 CDD MIP 76 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 Pfam Major intrinsic protein 72 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PANTHER AQUAPORIN NIP2-1 38 289 IPR034294 -
Vimu4g00064 303 FunFam Aquaporin NIP2-1 64 296 - -
Vimu4g00064 303 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Vimu4g00064 303 Gene3D Glycerol uptake facilitator protein. 68 297 IPR023271 -
Vimu4g00064 303 MobiDBLite consensus disorder prediction 1 28 - -
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00064 303 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00064 Vimu-Chr4 346627 349563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00064 3 303 Major Intrinsic Protein MIP AT1G80760 74.919 4.19e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00064 K09874 - gmx:100815637 498.434